| Tests passed/Failed/Skipped: | 1446/5/0 |
| Started on: | Sun Jul 02 10:11:14 CEST 2023 |
| Total time: | 149 seconds (149405 ms) |
| Included groups: | Functional |
| Excluded groups: |
| FAILED TESTS | |||
| Test method | Exception | Time (seconds) | Instance |
| testCalculateIdWidth_withMaxWidth Test class: jalview.gui.AlignmentPanelTest |
java.lang.AssertionError: expected [209] but found [211] at jalview.gui.AlignmentPanelTest.testCalculateIdWidth_withMaxWidth(AlignmentPanelTest.java:250) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 30 stack frames java.lang.AssertionError: expected [209] but found [211] at org.testng.Assert.fail(Assert.java:94) at org.testng.Assert.failNotEquals(Assert.java:496) at org.testng.Assert.assertEquals(Assert.java:125) at org.testng.Assert.assertEquals(Assert.java:372) at org.testng.Assert.assertEquals(Assert.java:382) at jalview.gui.AlignmentPanelTest.testCalculateIdWidth_withMaxWidth(AlignmentPanelTest.java:250) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.gui.AlignmentPanelTest@77b325b3 |
| testCalculateWrappedGeometry_noAnnotations Test class: jalview.gui.SeqCanvasTest |
java.lang.AssertionError: expected [17] but found [20] at jalview.gui.SeqCanvasTest.testCalculateWrappedGeometry_noAnnotations(SeqCanvasTest.java:67) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 30 stack frames java.lang.AssertionError: expected [17] but found [20] at org.testng.Assert.fail(Assert.java:94) at org.testng.Assert.failNotEquals(Assert.java:496) at org.testng.Assert.assertEquals(Assert.java:125) at org.testng.Assert.assertEquals(Assert.java:372) at org.testng.Assert.assertEquals(Assert.java:382) at jalview.gui.SeqCanvasTest.testCalculateWrappedGeometry_noAnnotations(SeqCanvasTest.java:67) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.gui.SeqCanvasTest@df5f5c0 |
| testCalculateWrappedGeometry_withAnnotations Test class: jalview.gui.SeqCanvasTest |
java.lang.AssertionError: expected [17] but found [20] at jalview.gui.SeqCanvasTest.testCalculateWrappedGeometry_withAnnotations(SeqCanvasTest.java:235) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 30 stack frames java.lang.AssertionError: expected [17] but found [20] at org.testng.Assert.fail(Assert.java:94) at org.testng.Assert.failNotEquals(Assert.java:496) at org.testng.Assert.assertEquals(Assert.java:125) at org.testng.Assert.assertEquals(Assert.java:372) at org.testng.Assert.assertEquals(Assert.java:382) at jalview.gui.SeqCanvasTest.testCalculateWrappedGeometry_withAnnotations(SeqCanvasTest.java:235) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.gui.SeqCanvasTest@df5f5c0 |
| testFindMousePosition_wrapped_scales_longSequence Test class: jalview.gui.SeqPanelTest |
java.lang.AssertionError: expected [17] but found [20] at jalview.gui.SeqPanelTest.testFindMousePosition_wrapped_scales_longSequence(SeqPanelTest.java:940) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 30 stack frames java.lang.AssertionError: expected [17] but found [20] at org.testng.Assert.fail(Assert.java:94) at org.testng.Assert.failNotEquals(Assert.java:496) at org.testng.Assert.assertEquals(Assert.java:125) at org.testng.Assert.assertEquals(Assert.java:372) at org.testng.Assert.assertEquals(Assert.java:382) at jalview.gui.SeqPanelTest.testFindMousePosition_wrapped_scales_longSequence(SeqPanelTest.java:940) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.gui.SeqPanelTest@308a6984 |
| testGetVisibleWidth Test class: jalview.gui.AlignmentPanelTest |
java.lang.AssertionError: expected [115] but found [105] at jalview.gui.AlignmentPanelTest.testGetVisibleWidth(AlignmentPanelTest.java:271) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 30 stack frames java.lang.AssertionError: expected [115] but found [105] at org.testng.Assert.fail(Assert.java:94) at org.testng.Assert.failNotEquals(Assert.java:496) at org.testng.Assert.assertEquals(Assert.java:125) at org.testng.Assert.assertEquals(Assert.java:372) at org.testng.Assert.assertEquals(Assert.java:382) at jalview.gui.AlignmentPanelTest.testGetVisibleWidth(AlignmentPanelTest.java:271) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.gui.AlignmentPanelTest@77b325b3 |
| PASSED TESTS | |||
| Test method | Exception | Time (seconds) | Instance |
| appCacheLimitTest Test class: jalview.io.cache.AppCacheTest |
0 | jalview.io.cache.AppCacheTest@117632cf | |
| appCacheTest Test class: jalview.io.cache.AppCacheTest |
0 | jalview.io.cache.AppCacheTest@117632cf | |
| backupsEnabledNoRollMaxTest Test class: jalview.io.BackupFilesTest |
0 | jalview.io.BackupFilesTest@bae47a0 | |
| backupsEnabledReverseRollMaxTest Test class: jalview.io.BackupFilesTest |
0 | jalview.io.BackupFilesTest@bae47a0 | |
| backupsEnabledRollMaxTest Test class: jalview.io.BackupFilesTest |
0 | jalview.io.BackupFilesTest@bae47a0 | |
| backupsEnabledSingleFileBackupTest Test class: jalview.io.BackupFilesTest |
0 | jalview.io.BackupFilesTest@bae47a0 | |
| buildPDBQueryTest Test class: jalview.gui.structurechooser.StructureChooserQuerySourceTest |
0 | jalview.gui.structurechooser.StructureChooserQuerySourceTest@3be8821f | |
| buildThreeDBQueryTest Test class: jalview.gui.structurechooser.StructureChooserQuerySourceTest |
0 | jalview.gui.structurechooser.StructureChooserQuerySourceTest@3be8821f | |
| cascadingThreeDBandPDBQuerys Test class: jalview.gui.structurechooser.StructureChooserQuerySourceTest Parameters: P38398 |
0 | jalview.gui.structurechooser.StructureChooserQuerySourceTest@3be8821f | |
| cascadingThreeDBandPDBQuerys Test class: jalview.gui.structurechooser.StructureChooserQuerySourceTest Parameters: INS_HUMAN |
0 | jalview.gui.structurechooser.StructureChooserQuerySourceTest@3be8821f | |
| cascadingThreeDBandPDBQuerys Test class: jalview.gui.structurechooser.StructureChooserQuerySourceTest Parameters: R1AB_SARS2 |
1 | jalview.gui.structurechooser.StructureChooserQuerySourceTest@3be8821f | |
| cascadingThreeDBandPDBQuerys Test class: jalview.gui.structurechooser.StructureChooserQuerySourceTest Parameters: FER1_MAIZE |
0 | jalview.gui.structurechooser.StructureChooserQuerySourceTest@3be8821f | |
| checkAnnotationWiring Test class: jalview.io.AnnotatedPDBFileInputTest |
0 | jalview.io.AnnotatedPDBFileInputTest@64b31700 | |
| checkHelpTargets Test class: jalview.gui.HelpTest |
0 | jalview.gui.HelpTest@5cad8b7d | |
| checkNoDuplicates Test class: jalview.io.AnnotatedPDBFileInputTest |
0 | jalview.io.AnnotatedPDBFileInputTest@64b31700 | |
| checkPDBSequenceFeatures Test class: jalview.io.AnnotatedPDBFileInputTest |
0 | jalview.io.AnnotatedPDBFileInputTest@64b31700 | |
| colorSchemeTest Test class: jalview.io.JSONFileTest |
0 | jalview.io.JSONFileTest@54336c81 | |
| compareTransferredToRefPDBAnnot Test class: jalview.structure.Mapping |
1 | jalview.structure.Mapping@7726e185 | |
| coverageForEqualsAndHashFunction Test class: jalview.fts.core.FTSRestClientTest |
0 | jalview.fts.core.FTSRestClientTest@11ee02f8 | |
| coverageForEqualsAndHashFunction Test class: jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest |
0 | jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest@3a71c100 | |
| coverageForExceptionBranches Test class: jalview.fts.core.FTSRestClientTest |
java.lang.Exception: Couldn't find data column with name : unavailable column at jalview.fts.core.FTSRestClient.getDataColumnByNameOrCode(FTSRestClient.java:432) at jalview.fts.core.FTSRestClientTest.coverageForExceptionBranches(FTSRestClientTest.java:325) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.lang.Exception: Couldn't find data column with name : unavailable column at jalview.fts.core.FTSRestClient.getDataColumnByNameOrCode(FTSRestClient.java:432) at jalview.fts.core.FTSRestClientTest.coverageForExceptionBranches(FTSRestClientTest.java:325) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.fts.core.FTSRestClientTest@11ee02f8 |
| coverageForMiscellaneousBranches Test class: jalview.fts.core.FTSRestClientTest |
0 | jalview.fts.core.FTSRestClientTest@11ee02f8 | |
| curlyWUSSsecondaryStructureForRNASequence Test class: jalview.io.StockholmFileTest |
0 | jalview.io.StockholmFileTest@51bde877 | |
| dbrefOutput Test class: jalview.io.StockholmFileTest |
0 | jalview.io.StockholmFileTest@51bde877 | |
| detectWussBrackets Test class: jalview.io.StockholmFileTest |
0 | jalview.io.StockholmFileTest@51bde877 | |
| displayTDBQueryTest Test class: jalview.gui.StructureChooserTest |
0 | jalview.gui.StructureChooserTest@7a34b7b8 | |
| exampleAnnotationFileIO Test class: jalview.io.AnnotationFileIOTest |
0 | jalview.io.AnnotationFileIOTest@3b65e559 | |
| expectedNullPointerException Test class: jalview.io.BioJsHTMLOutputTest |
java.lang.NullPointerException: dirName MUST not be null! at java.base/java.util.Objects.requireNonNull(Objects.java:246) at jalview.io.BioJsHTMLOutput.refreshVersionInfo(BioJsHTMLOutput.java:67) at jalview.io.BioJsHTMLOutputTest.expectedNullPointerException(BioJsHTMLOutputTest.java:84) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.lang.NullPointerException: dirName MUST not be null! at java.base/java.util.Objects.requireNonNull(Objects.java:246) at jalview.io.BioJsHTMLOutput.refreshVersionInfo(BioJsHTMLOutput.java:67) at jalview.io.BioJsHTMLOutputTest.expectedNullPointerException(BioJsHTMLOutputTest.java:84) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.io.BioJsHTMLOutputTest@74a9c4b0 |
| fetchStructuresInfoMockedTest Test class: jalview.gui.StructureChooserTest |
0 | jalview.gui.StructureChooserTest@7a34b7b8 | |
| fullWUSSsecondaryStructureForRNASequence Test class: jalview.io.StockholmFileTest |
0 | jalview.io.StockholmFileTest@51bde877 | |
| gatherViewsHere Test class: jalview.project.Jalview2xmlTests |
3 | jalview.project.Jalview2xmlTests@39fc6b2c | |
| getAllDefaulDisplayedDataColumns Test class: jalview.fts.core.FTSRestClientTest |
0 | jalview.fts.core.FTSRestClientTest@11ee02f8 | |
| getAllFTSDataColumns Test class: jalview.fts.core.FTSRestClientTest |
0 | jalview.fts.core.FTSRestClientTest@11ee02f8 | |
| getAllFTSDataColumns Test class: jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest |
0 | jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest@3a71c100 | |
| getBioJsMSAVersions Test class: jalview.io.BioJsHTMLOutputTest |
0 | jalview.io.BioJsHTMLOutputTest@74a9c4b0 | |
| getColumnClassTest Test class: jalview.fts.core.FTSRestClientTest |
0 | jalview.fts.core.FTSRestClientTest@11ee02f8 | |
| getColumnClassTest Test class: jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest |
0 | jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest@3a71c100 | |
| getColumnMaxWidthTest Test class: jalview.fts.core.FTSRestClientTest |
0 | jalview.fts.core.FTSRestClientTest@11ee02f8 | |
| getColumnMinWidthTest Test class: jalview.fts.core.FTSRestClientTest |
0 | jalview.fts.core.FTSRestClientTest@11ee02f8 | |
| getColumnMinWidthTest Test class: jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest |
0 | jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest@3a71c100 | |
| getColumnPreferredWidthTest Test class: jalview.fts.core.FTSRestClientTest |
0 | jalview.fts.core.FTSRestClientTest@11ee02f8 | |
| getDataColumnByNameOrCode Test class: jalview.fts.core.FTSRestClientTest |
0 | jalview.fts.core.FTSRestClientTest@11ee02f8 | |
| getDataColumnByNameOrCode Test class: jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest |
0 | jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest@3a71c100 | |
| getDataColumnGroupById Test class: jalview.fts.core.FTSRestClientTest |
0 | jalview.fts.core.FTSRestClientTest@11ee02f8 | |
| getDataColumnGroupById Test class: jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest |
0 | jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest@3a71c100 | |
| getDataColumnsFieldsAsCommaDelimitedString Test class: jalview.fts.core.FTSRestClientTest |
0 | jalview.fts.core.FTSRestClientTest@11ee02f8 | |
| getDataColumnsFieldsAsCommaDelimitedString Test class: jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest |
0 | jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest@3a71c100 | |
| getDefaultResponsePageSize Test class: jalview.fts.core.FTSRestClientTest |
0 | jalview.fts.core.FTSRestClientTest@11ee02f8 | |
| getDefaultResponsePageSize Test class: jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest |
0 | jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest@3a71c100 | |
| getGenomicRangesFromFeatures Test class: jalview.ext.ensembl.EnsemblSeqProxyTest |
0 | jalview.ext.ensembl.EnsemblSeqProxyTest@3c1e3314 | |
| getJalviewAlignmentAsJsonString Test class: jalview.io.BioJsHTMLOutputTest |
3 | jalview.io.BioJsHTMLOutputTest@74a9c4b0 | |
| getPDBDocFieldsAsCommaDelimitedStringTest Test class: jalview.fts.service.pdb.PDBFTSRestClientTest |
0 | jalview.fts.service.pdb.PDBFTSRestClientTest@61a5b4ae | |
| getPDBIdColumIndexTest Test class: jalview.fts.service.pdb.PDBFTSRestClientTest |
0 | jalview.fts.service.pdb.PDBFTSRestClientTest@61a5b4ae | |
| getPrimaryKeyColumIndexTest Test class: jalview.fts.core.FTSRestClientTest |
0 | jalview.fts.core.FTSRestClientTest@11ee02f8 | |
| getPrimaryKeyColumIndexTest Test class: jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest |
0 | jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest@3a71c100 | |
| getPrimaryKeyColumn Test class: jalview.fts.core.FTSRestClientTest |
0 | jalview.fts.core.FTSRestClientTest@11ee02f8 | |
| getPrimaryKeyColumn Test class: jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest |
0 | jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest@3a71c100 | |
| getSearchableDataColumns Test class: jalview.fts.core.FTSRestClientTest |
0 | jalview.fts.core.FTSRestClientTest@11ee02f8 | |
| getSearchableDataColumns Test class: jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest |
0 | jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest@3a71c100 | |
| getTDBIdColumIndexTest Test class: jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest |
0 | jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest@3a71c100 | |
| getUserInputTest Test class: jalview.io.cache.JvCacheableInputBoxTest |
0 | jalview.io.cache.JvCacheableInputBoxTest@2fb68ec6 | |
| getValue Test class: jalview.urls.UrlLinkDisplayTest |
0 | jalview.urls.UrlLinkDisplayTest@1ad777f | |
| hiddenColsTest Test class: jalview.io.JSONFileTest |
0 | jalview.io.JSONFileTest@54336c81 | |
| hiddenSeqsTest Test class: jalview.io.JSONFileTest |
0 | jalview.io.JSONFileTest@54336c81 | |
| isShowSeqFeaturesSet Test class: jalview.io.JSONFileTest |
0 | jalview.io.JSONFileTest@54336c81 | |
| loadAndSaveAlignment Test class: jalview.io.WindowsFileLoadAndSaveTest |
0 | jalview.io.WindowsFileLoadAndSaveTest@492fc69e | |
| mapFer1From3W5V Test class: jalview.structure.Mapping |
0 | jalview.structure.Mapping@7726e185 | |
| noBackupsEnabledTest Test class: jalview.io.BackupFilesTest |
0 | jalview.io.BackupFilesTest@bae47a0 | |
| noDuplicatePdbMappingsMade Test class: jalview.project.Jalview2xmlTests |
1 | jalview.project.Jalview2xmlTests@39fc6b2c | |
| openCrossrefsForEnsemblTwice Test class: jalview.io.CrossRef2xmlTests |
7 | jalview.io.CrossRef2xmlTests@1c05a54d | |
| pfamFileDataExtraction Test class: jalview.io.StockholmFileTest |
0 | jalview.io.StockholmFileTest@51bde877 | |
| pfamFileIO Test class: jalview.io.StockholmFileTest |
0 | jalview.io.StockholmFileTest@51bde877 | |
| populateCmbSearchTargetOptionsTest Test class: jalview.fts.service.pdb.PDBFTSPanelTest |
0 | jalview.fts.service.pdb.PDBFTSPanelTest@4102b1b1 | |
| populateCmbSearchTargetOptionsTest Test class: jalview.fts.threedbeacons.TDBeaconsPanelTest |
0 | jalview.fts.threedbeacons.TDBeaconsPanelTest@5b69fd74 | |
| populateFilterComboBoxTest Test class: jalview.gui.StructureChooserTest |
0 | jalview.gui.StructureChooserTest@7a34b7b8 | |
| readGff3File Test class: jalview.io.FeaturesFileTest |
0 | jalview.io.FeaturesFileTest@214894fc | |
| reportCurrentWorkingDirectory Test class: jalview.bin.CommandLineOperations |
0 | jalview.bin.CommandLineOperations@33c2bd | |
| rfamFileIO Test class: jalview.io.StockholmFileTest |
0 | jalview.io.StockholmFileTest@51bde877 | |
| roundTripTest Test class: jalview.io.JSONFileTest |
0 | jalview.io.JSONFileTest@54336c81 | |
| sanitizeSeqNameTest Test class: jalview.gui.StructureChooserTest |
0 | jalview.gui.StructureChooserTest@7a34b7b8 | |
| sanitizeSeqNameTest Test class: jalview.gui.structurechooser.StructureChooserQuerySourceTest |
0 | jalview.gui.structurechooser.StructureChooserQuerySourceTest@3be8821f | |
| secondaryStructureForRNASequence Test class: jalview.io.StockholmFileTest |
0 | jalview.io.StockholmFileTest@51bde877 | |
| showConfirmDialogFamilyTest Test class: jalview.gui.JvOptionPaneTest |
0 | jalview.gui.JvOptionPaneTest@25243bc1 | |
| showInputDialogFamilyTest Test class: jalview.gui.JvOptionPaneTest |
0 | jalview.gui.JvOptionPaneTest@25243bc1 | |
| showInternalConfirmDialogFamilyTest Test class: jalview.gui.JvOptionPaneTest |
0 | jalview.gui.JvOptionPaneTest@25243bc1 | |
| showInternalMessageDialogFamilyTest Test class: jalview.gui.JvOptionPaneTest |
0 | jalview.gui.JvOptionPaneTest@25243bc1 | |
| showMessageDialogFamilyTest Test class: jalview.gui.JvOptionPaneTest |
0 | jalview.gui.JvOptionPaneTest@25243bc1 | |
| simpleGff3FileClass Test class: jalview.io.FeaturesFileTest |
0 | jalview.io.FeaturesFileTest@214894fc | |
| simpleGff3FileLoader Test class: jalview.io.FeaturesFileTest |
0 | jalview.io.FeaturesFileTest@214894fc | |
| simpleGff3RelaxedIdMatching Test class: jalview.io.FeaturesFileTest |
0 | jalview.io.FeaturesFileTest@214894fc | |
| stockholmFileRnaSSAlphaChars Test class: jalview.io.StockholmFileTest |
0 | jalview.io.StockholmFileTest@51bde877 | |
| stockholmFileRnaSSSpaceChars Test class: jalview.io.StockholmFileTest |
0 | jalview.io.StockholmFileTest@51bde877 | |
| testAboveThreshold Test class: jalview.renderer.ResidueShaderTest |
0 | jalview.renderer.ResidueShaderTest@2e27d72f | |
| testAdd Test class: jalview.ext.android.SparseIntArrayTest |
0 | jalview.ext.android.SparseIntArrayTest@10ad20cb | |
| testAdd Test class: jalview.ext.android.SparseShortArrayTest |
0 | jalview.ext.android.SparseShortArrayTest@7dd712e8 | |
| testAdd Test class: jalview.util.SparseCountTest |
0 | jalview.util.SparseCountTest@1af1347d | |
| testAddAlignmentAnnotation Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testAddCodonFrame Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testAddDBRef Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testAddEdit_groupInsertGaps Test class: jalview.commands.EditCommandTest |
0 | jalview.commands.EditCommandTest@12f3afb5 | |
| testAddEdit_multipleDeleteGap Test class: jalview.commands.EditCommandTest |
0 | jalview.commands.EditCommandTest@12f3afb5 | |
| testAddEdit_multipleInsertGap Test class: jalview.commands.EditCommandTest |
0 | jalview.commands.EditCommandTest@12f3afb5 | |
| testAddEdit_removeAllGaps Test class: jalview.commands.EditCommandTest |
0 | jalview.commands.EditCommandTest@12f3afb5 | |
| testAddElement Test class: jalview.datamodel.ColumnSelectionTest |
0 | jalview.datamodel.ColumnSelectionTest@3ad394e6 | |
| testAddExonerateGffToAlignment Test class: jalview.io.gff.ExonerateHelperTest |
0 | jalview.io.gff.ExonerateHelperTest@d71adc2 | |
| testAddFeature Test class: jalview.datamodel.features.FeatureStoreTest |
0 | jalview.datamodel.features.FeatureStoreTest@106faf11 | |
| testAddFeatureDetails Test class: jalview.gui.PopupMenuTest |
0 | jalview.gui.PopupMenuTest@467f77a5 | |
| testAddFeatureDetails_linkedFeatures Test class: jalview.gui.PopupMenuTest |
0 | jalview.gui.PopupMenuTest@467f77a5 | |
| testAddGap Test class: jalview.datamodel.ResidueCountTest |
0 | jalview.datamodel.ResidueCountTest@24b52d3e | |
| testAddMap Test class: jalview.datamodel.AlignedCodonFrameTest |
0 | jalview.datamodel.AlignedCodonFrameTest@7bd69e82 | |
| testAddMapList Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testAddMapList_contiguous Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testAddMapList_sameMap Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testAddMappedPositions Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testAddMappedPositions_withStopCodon Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testAddMenuItems_forAlignFrame Test class: jalview.gui.ColourMenuHelperTest |
0 | jalview.gui.ColourMenuHelperTest@eadb475 | |
| testAddMenuItems_nucleotide Test class: jalview.gui.ColourMenuHelperTest |
0 | jalview.gui.ColourMenuHelperTest@eadb475 | |
| testAddMenuItems_peptide Test class: jalview.gui.ColourMenuHelperTest |
0 | jalview.gui.ColourMenuHelperTest@eadb475 | |
| testAddMenuItems_simpleOnly Test class: jalview.gui.ColourMenuHelperTest |
0 | jalview.gui.ColourMenuHelperTest@eadb475 | |
| testAddOffsetPositions Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testAddOrRemove Test class: jalview.datamodel.SequenceGroupTest |
0 | jalview.datamodel.SequenceGroupTest@3a45c42a | |
| testAddPDBId Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testAddRange Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testAddResult Test class: jalview.datamodel.SearchResultsTest |
0 | jalview.datamodel.SearchResultsTest@15deb1dc | |
| testAddSequence Test class: jalview.datamodel.SequenceGroupTest |
0 | jalview.datamodel.SequenceGroupTest@3a45c42a | |
| testAddSequenceFeatures Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testAddSequencePreserveDatasetIntegrity Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testAddStrToSingleSeqViewJMol Test class: jalview.ext.jmol.JmolViewerTest |
2 | jalview.ext.jmol.JmolViewerTest@622ef26a | |
| testAdjustForAlignment Test class: jalview.datamodel.AlignmentAnnotationTests |
0 | jalview.datamodel.AlignmentAnnotationTests@6831d8fd | |
| testAdjustForHiddenColumns Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testAdjustForHiddenSeqs Test class: jalview.datamodel.HiddenSequencesTest |
0 | jalview.datamodel.HiddenSequencesTest@6754ef00 | |
| testAdjustForProteinLength Test class: jalview.ws.dbsources.EmblXmlSourceTest |
0 | jalview.ws.dbsources.EmblXmlSourceTest@2237bada | |
| testAdjustForProteinLength Test class: jalview.io.EmblFlatFileTest |
0 | jalview.io.EmblFlatFileTest@5fd9b663 | |
| testAdjustHeightSequenceAdded Test class: jalview.datamodel.HiddenSequencesTest |
0 | jalview.datamodel.HiddenSequencesTest@6754ef00 | |
| testAdjustHeightSequenceDeleted Test class: jalview.datamodel.HiddenSequencesTest |
0 | jalview.datamodel.HiddenSequencesTest@6754ef00 | |
| testAlignAsSameSequences Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testAlignAsSameSequencesMultipleSubSeq Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testAlignAs_alternateTranscriptsUngapped Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testAlignAs_cdnaAsProtein Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testAlignAs_cdnaAsProtein_singleSequence Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testAlignAs_dnaAsDna Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testAlignAs_proteinAsCdna Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testAlignProteinAsDna Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testAlignProteinAsDna_incompleteStartCodon Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testAlignSequenceAs_keepIntronGapsOnly Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testAlignSequenceAs_mappedProteinProtein Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testAlignSequenceAs_withMapping_noIntrons Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testAlignSequenceAs_withMapping_withIntrons Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testAlignSequenceAs_withMapping_withUnmappedProtein Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testAlignSequenceAs_withTrailingPeptide Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testAlignmentLoader Test class: jalview.ext.jmol.JmolParserTest |
0 | jalview.ext.jmol.JmolParserTest@6b739528 | |
| testAllInputOperations Test class: jalview.bin.CommandLineOperations Parameters: CMD [-color zappo] executed successfully!, Failed command : -color zappo |
0 | jalview.bin.CommandLineOperations@33c2bd | |
| testAllInputOperations Test class: jalview.bin.CommandLineOperations Parameters: CMD [-props test/jalview/bin/testProps.jvprops] executed successfully!, Failed command : -props File |
0 | jalview.bin.CommandLineOperations@33c2bd | |
| testAllInputOperations Test class: jalview.bin.CommandLineOperations Parameters: CMD [-sortbytree] executed successfully!, Failed command : -sortbytree |
0 | jalview.bin.CommandLineOperations@33c2bd | |
| testAllInputOperations Test class: jalview.bin.CommandLineOperations Parameters: CMD [-jabaws http://www.compbio.dundee.ac.uk/jabaws] executed successfully!, Failed command : -jabaws http://www.compbio.dundee.ac.uk/jabaws |
0 | jalview.bin.CommandLineOperations@33c2bd | |
| testAllInputOperations Test class: jalview.bin.CommandLineOperations Parameters: CMD [-open examples/uniref50.fa] executed successfully!, Failed command : -open examples/uniref50.fa |
0 | jalview.bin.CommandLineOperations@33c2bd | |
| testAllInputOperations Test class: jalview.bin.CommandLineOperations Parameters: CMD [-nosortbytree] executed successfully!, Failed command : -nosortbytree |
0 | jalview.bin.CommandLineOperations@33c2bd | |
| testAllInputOperations Test class: jalview.bin.CommandLineOperations Parameters: CMD [-features examples/testdata/plantfdx.features] executed successfully!, Failed command : -features examples/testdata/plantfdx.features |
0 | jalview.bin.CommandLineOperations@33c2bd | |
| testAllInputOperations Test class: jalview.bin.CommandLineOperations Parameters: CMD [-annotations examples/testdata/plantfdx.annotations] executed successfully!, Failed command : -annotations examples/testdata/plantfdx.annotations |
0 | jalview.bin.CommandLineOperations@33c2bd | |
| testAllInputOperations Test class: jalview.bin.CommandLineOperations Parameters: CMD [-tree examples/testdata/uniref50_test_tree] executed successfully!, Failed command : -tree examples/testdata/uniref50_test_tree |
0 | jalview.bin.CommandLineOperations@33c2bd | |
| testAllInputOperations Test class: jalview.bin.CommandLineOperations Parameters: CMD [-nousagestats] executed successfully!, Failed command : -nousagestats |
0 | jalview.bin.CommandLineOperations@33c2bd | |
| testAllInputOperations Test class: jalview.bin.CommandLineOperations Parameters: CMD [-noquestionnaire] executed successfully!, Failed command : -noquestionnaire |
0 | jalview.bin.CommandLineOperations@33c2bd | |
| testAmbiguousAminoAcidGetsStatusMessage Test class: jalview.gui.SeqPanelTest |
0 | jalview.gui.SeqPanelTest@308a6984 | |
| testAnd Test class: jalview.datamodel.features.FeatureMatcherSetTest |
0 | jalview.datamodel.features.FeatureMatcherSetTest@33aa93c | |
| testAnnotateAlignmentView Test class: jalview.io.AnnotationFileIOTest |
0 | jalview.io.AnnotationFileIOTest@3b65e559 | |
| testAnnotationEquivalence Test class: jalview.io.StockholmFileTest |
0 | jalview.io.StockholmFileTest@51bde877 | |
| testAnnotationParsed Test class: jalview.io.JSONFileTest |
0 | jalview.io.JSONFileTest@54336c81 | |
| testAnother Test class: jalview.datamodel.AlignedCodonIteratorTest |
0 | jalview.datamodel.AlignedCodonIteratorTest@74d7184a | |
| testAppend Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testAppendEdit_deleteGap Test class: jalview.commands.EditCommandTest |
0 | jalview.commands.EditCommandTest@12f3afb5 | |
| testAppendEdit_insertGap Test class: jalview.commands.EditCommandTest |
0 | jalview.commands.EditCommandTest@12f3afb5 | |
| testAppendFeature_DescEqualsType Test class: jalview.io.SequenceAnnotationReportTest |
0 | jalview.io.SequenceAnnotationReportTest@71652c98 | |
| testAppendFeature_colouredByAttribute Test class: jalview.io.SequenceAnnotationReportTest |
0 | jalview.io.SequenceAnnotationReportTest@71652c98 | |
| testAppendFeature_disulfideBond Test class: jalview.io.SequenceAnnotationReportTest |
0 | jalview.io.SequenceAnnotationReportTest@71652c98 | |
| testAppendFeature_noScore Test class: jalview.io.SequenceAnnotationReportTest |
0 | jalview.io.SequenceAnnotationReportTest@71652c98 | |
| testAppendFeature_status Test class: jalview.io.SequenceAnnotationReportTest |
0 | jalview.io.SequenceAnnotationReportTest@71652c98 | |
| testAppendFeature_stripHtml Test class: jalview.io.SequenceAnnotationReportTest |
0 | jalview.io.SequenceAnnotationReportTest@71652c98 | |
| testAppendFeature_virtualFeature Test class: jalview.io.SequenceAnnotationReportTest |
0 | jalview.io.SequenceAnnotationReportTest@71652c98 | |
| testAppendFeature_withScore Test class: jalview.io.SequenceAnnotationReportTest |
0 | jalview.io.SequenceAnnotationReportTest@71652c98 | |
| testAppendFeature_withScoreStatusAttribute Test class: jalview.io.SequenceAnnotationReportTest |
0 | jalview.io.SequenceAnnotationReportTest@71652c98 | |
| testAppendFeatures_longText Test class: jalview.io.SequenceAnnotationReportTest |
0 | jalview.io.SequenceAnnotationReportTest@71652c98 | |
| testAppendPercentage Test class: jalview.util.FormatTest |
0 | jalview.util.FormatTest@4a67318f | |
| testApplyConservation Test class: jalview.renderer.ResidueShaderTest |
0 | jalview.renderer.ResidueShaderTest@2e27d72f | |
| testArrayToList Test class: jalview.util.JSONUtilsTest |
0 | jalview.util.JSONUtilsTest@315ba14a | |
| testArrayToSeparatorList Test class: jalview.util.StringUtilsTest |
0 | jalview.util.StringUtilsTest@632aa1a3 | |
| testAsList Test class: jalview.analysis.AlignmentAnnotationUtilsTest |
0 | jalview.analysis.AlignmentAnnotationUtilsTest@6d1310f6 | |
| testAssertDatasetIsNormalised Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testAttributeNameComparator Test class: jalview.datamodel.features.FeatureAttributesTest |
0 | jalview.datamodel.features.FeatureAttributesTest@7692cd34 | |
| testBasicBoundsIterator Test class: jalview.datamodel.StartRegionIteratorTest |
0 | jalview.datamodel.StartRegionIteratorTest@47a64f7d | |
| testBecome Test class: jalview.datamodel.SequenceDummyTest |
0 | jalview.datamodel.SequenceDummyTest@57a4d5ee | |
| testBioJSONRoundTripWithColourSchemeNone Test class: jalview.io.JSONFileTest |
0 | jalview.io.JSONFileTest@54336c81 | |
| testBleachColour Test class: jalview.util.ColorUtilsTest |
0 | jalview.util.ColorUtilsTest@4a8b5227 | |
| testBlosum62_values Test class: jalview.analysis.scoremodels.ScoreMatrixTest |
0 | jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7 | |
| testBoundedIterator Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testBoundedStartIterator Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testBoundsIteratorUsingCursor Test class: jalview.datamodel.StartRegionIteratorTest |
0 | jalview.datamodel.StartRegionIteratorTest@47a64f7d | |
| testBoundsIteratorUsingNullCursor Test class: jalview.datamodel.StartRegionIteratorTest |
0 | jalview.datamodel.StartRegionIteratorTest@47a64f7d | |
| testBrighterThan Test class: jalview.util.ColorUtilsTest |
0 | jalview.util.ColorUtilsTest@4a8b5227 | |
| testBuildActionButtonsPanel Test class: jalview.gui.AnnotationChooserTest |
0 | jalview.gui.AnnotationChooserTest@63a5e46c | |
| testBuildAnnotationTypesMenus Test class: jalview.gui.PopupMenuTest |
0 | jalview.gui.PopupMenuTest@467f77a5 | |
| testBuildAnnotationTypesMenus_hideDisabled Test class: jalview.gui.PopupMenuTest |
0 | jalview.gui.PopupMenuTest@467f77a5 | |
| testBuildAnnotationTypesMenus_showDisabled Test class: jalview.gui.PopupMenuTest |
0 | jalview.gui.PopupMenuTest@467f77a5 | |
| testBuildApplyToOptionsPanel_noSelectionGroup Test class: jalview.gui.AnnotationChooserTest |
0 | jalview.gui.AnnotationChooserTest@63a5e46c | |
| testBuildApplyToOptionsPanel_withSelectionGroup Test class: jalview.gui.AnnotationChooserTest |
0 | jalview.gui.AnnotationChooserTest@63a5e46c | |
| testBuildColoursMap Test class: jalview.structures.models.AAStructureBindingModelTest |
0 | jalview.structures.models.AAStructureBindingModelTest@3d9fc57a | |
| testBuildLinkMenu Test class: jalview.gui.PopupMenuTest |
0 | jalview.gui.PopupMenuTest@467f77a5 | |
| testBuildPopupMenu Test class: jalview.gui.ScalePanelTest |
0 | jalview.gui.ScalePanelTest@420bc288 | |
| testBuildSearchResults Test class: jalview.util.MappingUtilsTest |
0 | jalview.util.MappingUtilsTest@54e81b21 | |
| testBuildSearchResults_withIntron Test class: jalview.util.MappingUtilsTest |
0 | jalview.util.MappingUtilsTest@54e81b21 | |
| testBuildShowHideOptionsPanel Test class: jalview.gui.AnnotationChooserTest |
0 | jalview.gui.AnnotationChooserTest@63a5e46c | |
| testBuildShowHidePanel Test class: jalview.gui.AnnotationChooserTest |
0 | jalview.gui.AnnotationChooserTest@63a5e46c | |
| testBuildSymbolIndex Test class: jalview.analysis.scoremodels.ScoreMatrixTest |
0 | jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7 | |
| testBuildSymbolIndex_nonAscii Test class: jalview.analysis.scoremodels.ScoreMatrixTest |
0 | jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7 | |
| testBuildUrl Test class: jalview.ws.ebi.EBIFetchClientTest |
0 | jalview.ws.ebi.EBIFetchClientTest@5bf61e67 | |
| testCalculateIdWidth_noArgs Test class: jalview.gui.AlignmentPanelTest |
0 | jalview.gui.AlignmentPanelTest@77b325b3 | |
| testCalculateMarks Test class: jalview.renderer.ScaleRendererTest |
0 | jalview.renderer.ScaleRendererTest@c0b41d6 | |
| testCalculate_noProfile Test class: jalview.analysis.AAFrequencyTest |
0 | jalview.analysis.AAFrequencyTest@6e0ff644 | |
| testCalculate_noThreshold Test class: jalview.analysis.ConservationTest |
0 | jalview.analysis.ConservationTest@51c929ae | |
| testCalculate_threshold Test class: jalview.analysis.ConservationTest |
0 | jalview.analysis.ConservationTest@51c929ae | |
| testCalculate_withProfile Test class: jalview.analysis.AAFrequencyTest |
0 | jalview.analysis.AAFrequencyTest@6e0ff644 | |
| testChangeColour_background_groupsAndThresholds Test class: jalview.gui.AlignFrameTest |
0 | jalview.gui.AlignFrameTest@f325091 | |
| testCharSortByFloat Test class: jalview.util.QuickSortTest |
0 | jalview.util.QuickSortTest@450794b4 | |
| testCharSortByInt Test class: jalview.util.QuickSortTest |
0 | jalview.util.QuickSortTest@450794b4 | |
| testCheckOverflow Test class: jalview.ext.android.SparseIntArrayTest |
0 | jalview.ext.android.SparseIntArrayTest@10ad20cb | |
| testCheckValidRange Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testClear_HighlightAndSelection Test class: jalview.gui.SeqCanvasTest |
0 | jalview.gui.SeqCanvasTest@df5f5c0 | |
| testCloseViewer Test class: jalview.ext.rbvi.chimera.ChimeraXCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569 | |
| testCloseViewer Test class: jalview.ext.pymol.PymolCommandsTest |
0 | jalview.ext.pymol.PymolCommandsTest@5f577419 | |
| testCloseViewer Test class: jalview.ext.rbvi.chimera.ChimeraCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9 | |
| testCoalesceRanges Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testCodonTranslate Test class: jalview.schemes.ResiduePropertiesTest |
0 | jalview.schemes.ResiduePropertiesTest@1e34c607 | |
| testCodonTranslate_ambiguityCodes Test class: jalview.schemes.ResiduePropertiesTest |
0 | jalview.schemes.ResiduePropertiesTest@1e34c607 | |
| testColourByAnnotScores Test class: jalview.project.Jalview2xmlTests |
0 | jalview.project.Jalview2xmlTests@39fc6b2c | |
| testColourByChain Test class: jalview.ext.rbvi.chimera.ChimeraXCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569 | |
| testColourByChain Test class: jalview.ext.pymol.PymolCommandsTest |
0 | jalview.ext.pymol.PymolCommandsTest@5f577419 | |
| testColourByChain Test class: jalview.ext.rbvi.chimera.ChimeraCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9 | |
| testColourByChain Test class: jalview.ext.jmol.JmolCommandsTest |
0 | jalview.ext.jmol.JmolCommandsTest@3ef41c66 | |
| testColourByCharge Test class: jalview.ext.rbvi.chimera.ChimeraXCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569 | |
| testColourByCharge Test class: jalview.ext.pymol.PymolCommandsTest |
0 | jalview.ext.pymol.PymolCommandsTest@5f577419 | |
| testColourByCharge Test class: jalview.ext.rbvi.chimera.ChimeraCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9 | |
| testColourByCharge Test class: jalview.ext.jmol.JmolCommandsTest |
0 | jalview.ext.jmol.JmolCommandsTest@3ef41c66 | |
| testColourBySequence Test class: jalview.ext.rbvi.chimera.ChimeraXCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569 | |
| testColourBySequence Test class: jalview.ext.pymol.PymolCommandsTest |
0 | jalview.ext.pymol.PymolCommandsTest@5f577419 | |
| testColourBySequence Test class: jalview.ext.rbvi.chimera.ChimeraCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9 | |
| testColourBySequence Test class: jalview.ext.jmol.JmolCommandsTest |
0 | jalview.ext.jmol.JmolCommandsTest@3ef41c66 | |
| testColourResidues Test class: jalview.ext.pymol.PymolCommandsTest |
0 | jalview.ext.pymol.PymolCommandsTest@5f577419 | |
| testColourThresholdActions Test class: jalview.gui.AlignFrameTest |
0 | jalview.gui.AlignFrameTest@f325091 | |
| testColumns Test class: jalview.urls.UrlLinkTableModelTest |
0 | jalview.urls.UrlLinkTableModelTest@5bbbdd4b | |
| testCompareCodonPos Test class: jalview.analysis.DnaTest |
0 | jalview.analysis.DnaTest@29d2d081 | |
| testCompareCodonPos_isSymmetric Test class: jalview.analysis.DnaTest |
0 | jalview.analysis.DnaTest@29d2d081 | |
| testCompareCodonPos_oneOnly Test class: jalview.analysis.DnaTest |
0 | jalview.analysis.DnaTest@29d2d081 | |
| testCompareVersions Test class: jalview.util.StringUtilsTest |
0 | jalview.util.StringUtilsTest@632aa1a3 | |
| testCompleteConsensus_ignoreGaps_noLogo Test class: jalview.analysis.AAFrequencyTest |
0 | jalview.analysis.AAFrequencyTest@6e0ff644 | |
| testCompleteConsensus_includeGaps_showLogo Test class: jalview.analysis.AAFrequencyTest |
0 | jalview.analysis.AAFrequencyTest@6e0ff644 | |
| testComputePID_matchLongestSequence Test class: jalview.analysis.scoremodels.PIDModelTest |
0 | jalview.analysis.scoremodels.PIDModelTest@60afd40d | |
| testComputePID_matchShortestSequence Test class: jalview.analysis.scoremodels.PIDModelTest |
0 | jalview.analysis.scoremodels.PIDModelTest@60afd40d | |
| testComputePID_matchesComparisonPID Test class: jalview.analysis.scoremodels.PIDModelTest |
0 | jalview.analysis.scoremodels.PIDModelTest@60afd40d | |
| testComputePairwiseScores Test class: jalview.analysis.scoremodels.ScoreMatrixTest |
0 | jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7 | |
| testConfigureReferenceAnnotationsMenu Test class: jalview.gui.PopupMenuTest |
0 | jalview.gui.PopupMenuTest@467f77a5 | |
| testConfigureReferenceAnnotationsMenu_alreadyAdded Test class: jalview.gui.PopupMenuTest |
0 | jalview.gui.PopupMenuTest@467f77a5 | |
| testConfigureReferenceAnnotationsMenu_noReferenceAnnotations Test class: jalview.gui.PopupMenuTest |
0 | jalview.gui.PopupMenuTest@467f77a5 | |
| testConfigureReferenceAnnotationsMenu_noSequenceSelected Test class: jalview.gui.PopupMenuTest |
0 | jalview.gui.PopupMenuTest@467f77a5 | |
| testConfigureReferenceAnnotationsMenu_notOnAlignment Test class: jalview.gui.PopupMenuTest |
0 | jalview.gui.PopupMenuTest@467f77a5 | |
| testConfigureReferenceAnnotationsMenu_twoViews Test class: jalview.gui.PopupMenuTest |
0 | jalview.gui.PopupMenuTest@467f77a5 | |
| testConstructor Test class: jalview.datamodel.HiddenColumnsCursorTest |
0 | jalview.datamodel.HiddenColumnsCursorTest@1deb2c43 | |
| testConstructor Test class: jalview.analysis.scoremodels.ScoreMatrixTest |
0 | jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7 | |
| testConstructor Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testConstructor Test class: jalview.math.MatrixTest |
0 | jalview.math.MatrixTest@59221b97 | |
| testConstructor Test class: jalview.analysis.scoremodels.ScoreModelsTest |
0 | jalview.analysis.scoremodels.ScoreModelsTest@3f2049b6 | |
| testConstructor Test class: jalview.math.SparseMatrixTest |
0 | jalview.math.SparseMatrixTest@5a772895 | |
| testConstructor Test class: jalview.datamodel.features.SequenceFeaturesTest |
0 | jalview.datamodel.features.SequenceFeaturesTest@70f43b45 | |
| testConstructor Test class: jalview.util.matcher.MatcherTest |
0 | jalview.util.matcher.MatcherTest@2899a8db | |
| testConstructor Test class: jalview.viewmodel.OverviewDimensionsHideHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2 | |
| testConstructor Test class: jalview.viewmodel.OverviewDimensionsShowHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620 | |
| testConstructor Test class: jalview.datamodel.CigarArrayTest |
0 | jalview.datamodel.CigarArrayTest@5a2f016d | |
| testConstructor_coloursArray Test class: jalview.schemes.UserColourSchemeTest |
0 | jalview.schemes.UserColourSchemeTest@31198ceb | |
| testConstructor_fromDbref Test class: jalview.datamodel.PDBEntryTest |
0 | jalview.datamodel.PDBEntryTest@7561db12 | |
| testConstructor_gapDash Test class: jalview.analysis.scoremodels.ScoreMatrixTest |
0 | jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7 | |
| testConstructor_list Test class: jalview.datamodel.SequenceGroupTest |
0 | jalview.datamodel.SequenceGroupTest@3a45c42a | |
| testConstructor_matrixNotSquare Test class: jalview.analysis.scoremodels.ScoreMatrixTest |
java.lang.IllegalArgumentException: score matrix size must be square at jalview.analysis.scoremodels.ScoreMatrix.<init>(ScoreMatrix.java:147) at jalview.analysis.scoremodels.ScoreMatrix.<init>(ScoreMatrix.java:118) at jalview.analysis.scoremodels.ScoreMatrixTest.testConstructor_matrixNotSquare(ScoreMatrixTest.java:108) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.lang.IllegalArgumentException: score matrix size must be square at jalview.analysis.scoremodels.ScoreMatrix.<init>(ScoreMatrix.java:147) at jalview.analysis.scoremodels.ScoreMatrix.<init>(ScoreMatrix.java:118) at jalview.analysis.scoremodels.ScoreMatrixTest.testConstructor_matrixNotSquare(ScoreMatrixTest.java:108) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7 |
| testConstructor_matrixTooBig Test class: jalview.analysis.scoremodels.ScoreMatrixTest |
java.lang.IllegalArgumentException: score matrix size must match alphabet size at jalview.analysis.scoremodels.ScoreMatrix.<init>(ScoreMatrix.java:140) at jalview.analysis.scoremodels.ScoreMatrix.<init>(ScoreMatrix.java:118) at jalview.analysis.scoremodels.ScoreMatrixTest.testConstructor_matrixTooBig(ScoreMatrixTest.java:96) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.lang.IllegalArgumentException: score matrix size must match alphabet size at jalview.analysis.scoremodels.ScoreMatrix.<init>(ScoreMatrix.java:140) at jalview.analysis.scoremodels.ScoreMatrix.<init>(ScoreMatrix.java:118) at jalview.analysis.scoremodels.ScoreMatrixTest.testConstructor_matrixTooBig(ScoreMatrixTest.java:96) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7 |
| testConstructor_matrixTooSmall Test class: jalview.analysis.scoremodels.ScoreMatrixTest |
java.lang.IllegalArgumentException: score matrix size must match alphabet size at jalview.analysis.scoremodels.ScoreMatrix.<init>(ScoreMatrix.java:140) at jalview.analysis.scoremodels.ScoreMatrix.<init>(ScoreMatrix.java:118) at jalview.analysis.scoremodels.ScoreMatrixTest.testConstructor_matrixTooSmall(ScoreMatrixTest.java:84) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.lang.IllegalArgumentException: score matrix size must match alphabet size at jalview.analysis.scoremodels.ScoreMatrix.<init>(ScoreMatrix.java:140) at jalview.analysis.scoremodels.ScoreMatrix.<init>(ScoreMatrix.java:118) at jalview.analysis.scoremodels.ScoreMatrixTest.testConstructor_matrixTooSmall(ScoreMatrixTest.java:84) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7 |
| testConstructor_mergeRanges Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testConstructor_noSelectionGroup Test class: jalview.gui.PairwiseAlignmentPanelTest |
0 | jalview.gui.PairwiseAlignmentPanelTest@4201a617 | |
| testConstructor_prematureInstantiation Test class: jalview.gui.ProgressBarTest |
0 | jalview.gui.ProgressBarTest@1bb9aa43 | |
| testConstructor_withLists Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testConstructor_withSelectionGroup Test class: jalview.gui.PairwiseAlignmentPanelTest |
0 | jalview.gui.PairwiseAlignmentPanelTest@4201a617 | |
| testConstructor_wrongLayout Test class: jalview.gui.ProgressBarTest |
0 | jalview.gui.ProgressBarTest@1bb9aa43 | |
| testConstructors Test class: jalview.schemes.FeatureColourTest |
0 | jalview.schemes.FeatureColourTest@7668d560 | |
| testContains Test class: jalview.datamodel.SequenceGroupTest |
0 | jalview.datamodel.SequenceGroupTest@3a45c42a | |
| testContains Test class: jalview.bin.ArgsParserTest |
0 | jalview.bin.ArgsParserTest@10b3df93 | |
| testContains Test class: jalview.util.MappingUtilsTest |
0 | jalview.util.MappingUtilsTest@54e81b21 | |
| testContains Test class: jalview.datamodel.features.FeatureStoreTest |
0 | jalview.datamodel.features.FeatureStoreTest@106faf11 | |
| testConvertCodon Test class: jalview.analysis.DnaTest |
0 | jalview.analysis.DnaTest@29d2d081 | |
| testCopy Test class: jalview.math.MatrixTest |
0 | jalview.math.MatrixTest@59221b97 | |
| testCopyConstructor Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testCopyConstructor Test class: jalview.datamodel.MappingTest |
0 | jalview.datamodel.MappingTest@323e8306 | |
| testCopyConstructor Test class: jalview.schemes.FeatureColourTest |
0 | jalview.schemes.FeatureColourTest@7668d560 | |
| testCopyConstructor Test class: jalview.datamodel.SequenceGroupTest |
0 | jalview.datamodel.SequenceGroupTest@3a45c42a | |
| testCopyConstructor Test class: jalview.datamodel.AlignmentAnnotationTests |
0 | jalview.datamodel.AlignmentAnnotationTests@6831d8fd | |
| testCopyConstructor Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testCopyConstructor Test class: jalview.viewmodel.styles.ViewStyleTest |
0 | jalview.viewmodel.styles.ViewStyleTest@130a0f66 | |
| testCopyConstructor Test class: jalview.datamodel.ColumnSelectionTest |
0 | jalview.datamodel.ColumnSelectionTest@3ad394e6 | |
| testCopyConstructor2 Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testCopyConstructor_noDataset Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testCopyConstructor_withDataset Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testCopyConstructors Test class: jalview.datamodel.SequenceFeatureTest |
0 | jalview.datamodel.SequenceFeatureTest@5af5def9 | |
| testCopyViewSettings Test class: jalview.project.Jalview2xmlTests |
2 | jalview.project.Jalview2xmlTests@39fc6b2c | |
| testCouldReplaceSequence Test class: jalview.datamodel.AlignedCodonFrameTest |
0 | jalview.datamodel.AlignedCodonFrameTest@7bd69e82 | |
| testCountConservationAndGaps Test class: jalview.analysis.ConservationTest |
0 | jalview.analysis.ConservationTest@51c929ae | |
| testCountDisjunction Test class: jalview.util.SetUtilsTest |
0 | jalview.util.SetUtilsTest@273c947f | |
| testCountPositions Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testCounts Test class: jalview.urls.UrlLinkTableModelTest |
0 | jalview.urls.UrlLinkTableModelTest@5bbbdd4b | |
| testCreateColourFromName Test class: jalview.util.ColorUtilsTest |
0 | jalview.util.ColorUtilsTest@4a8b5227 | |
| testCreateDatasetAlignment Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testCreateDatasetAlignmentWithMappedToSeqs Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testCreateDatasetSequence Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testCreateDataset_updateDbrefMappings Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testCreateFastaSequenceIndex Test class: jalview.ext.htsjdk.TestHtsContigDb |
0 | jalview.ext.htsjdk.TestHtsContigDb@54a3ab8f | |
| testCreateLinksForNonDynamic Test class: jalview.util.UrlLinkTest |
0 | jalview.util.UrlLinkTest@20765ed5 | |
| testCreateLinksFromNullSequence Test class: jalview.util.UrlLinkTest |
0 | jalview.util.UrlLinkTest@20765ed5 | |
| testCreateLinksFromSequence Test class: jalview.util.UrlLinkTest |
0 | jalview.util.UrlLinkTest@20765ed5 | |
| testCreateSequenceAnnotationReport Test class: jalview.io.SequenceAnnotationReportTest |
0 | jalview.io.SequenceAnnotationReportTest@71652c98 | |
| testCreateSequenceAnnotationReport_withEllipsis Test class: jalview.io.SequenceAnnotationReportTest |
0 | jalview.io.SequenceAnnotationReportTest@71652c98 | |
| testCreateUrlProvider Test class: jalview.urls.AppletUrlProviderFactoryTest |
0 | jalview.urls.AppletUrlProviderFactoryTest@d4ab71a | |
| testCreateUrlProvider Test class: jalview.urls.DesktopUrlProviderFactoryTest |
0 | jalview.urls.DesktopUrlProviderFactoryTest@1af05b03 | |
| testCut Test class: jalview.commands.EditCommandTest |
0 | jalview.commands.EditCommandTest@12f3afb5 | |
| testCut_withFeatures Test class: jalview.commands.EditCommandTest |
0 | jalview.commands.EditCommandTest@12f3afb5 | |
| testCut_withFeatures5prime Test class: jalview.commands.EditCommandTest |
0 | jalview.commands.EditCommandTest@12f3afb5 | |
| testCut_withFeatures_exhaustive Test class: jalview.commands.EditCommandTest |
0 | jalview.commands.EditCommandTest@12f3afb5 | |
| testDarkerThan Test class: jalview.util.ColorUtilsTest |
0 | jalview.util.ColorUtilsTest@4a8b5227 | |
| testDatatype Test class: jalview.datamodel.features.FeatureAttributesTest |
0 | jalview.datamodel.features.FeatureAttributesTest@7692cd34 | |
| testDecodeCodon Test class: jalview.analysis.CodingUtilsTest |
0 | jalview.analysis.CodingUtilsTest@255990cc | |
| testDecodeNucleotide Test class: jalview.analysis.CodingUtilsTest |
0 | jalview.analysis.CodingUtilsTest@255990cc | |
| testDecodeSearchTerm Test class: jalview.fts.service.pdb.PDBFTSPanelTest |
0 | jalview.fts.service.pdb.PDBFTSPanelTest@4102b1b1 | |
| testDefaultUrl Test class: jalview.urls.CustomUrlProviderTest |
0 | jalview.urls.CustomUrlProviderTest@3b4ef7 | |
| testDefaultUrl Test class: jalview.urls.IdentifiersUrlProviderTest |
0 | jalview.urls.IdentifiersUrlProviderTest@5987e932 | |
| testDeletable Test class: jalview.urls.UrlLinkTableModelTest |
0 | jalview.urls.UrlLinkTableModelTest@5bbbdd4b | |
| testDelete Test class: jalview.datamodel.features.FeatureStoreTest |
0 | jalview.datamodel.features.FeatureStoreTest@106faf11 | |
| testDelete Test class: jalview.datamodel.features.SequenceFeaturesTest |
0 | jalview.datamodel.features.SequenceFeaturesTest@70f43b45 | |
| testDeleteAll Test class: jalview.datamodel.features.SequenceFeaturesTest |
0 | jalview.datamodel.features.SequenceFeaturesTest@70f43b45 | |
| testDeleteAllAnnotations_excludingAutocalculated Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testDeleteAllAnnotations_includingAutocalculated Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testDeleteChars Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testDeleteChars Test class: jalview.util.StringUtilsTest |
0 | jalview.util.StringUtilsTest@632aa1a3 | |
| testDeleteChars_withDbRefsAndFeatures Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testDeleteChars_withGaps Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testDeleteHiddenSequence Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testDeleteSequenceByIndex Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testDeleteSequenceBySeq Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testDelete_readd Test class: jalview.datamodel.features.FeatureStoreTest |
0 | jalview.datamodel.features.FeatureStoreTest@106faf11 | |
| testDeregisterFileFormat Test class: jalview.io.FileFormatsTest |
0 | jalview.io.FileFormatsTest@10567255 | |
| testDeregisterMapping_onCloseView Test class: jalview.gui.AlignViewportTest |
0 | jalview.gui.AlignViewportTest@437e951d | |
| testDeregisterMapping_withNoReference Test class: jalview.gui.AlignViewportTest |
0 | jalview.gui.AlignViewportTest@437e951d | |
| testDeregisterMapping_withReference Test class: jalview.gui.AlignViewportTest |
0 | jalview.gui.AlignViewportTest@437e951d | |
| testDeriveSequence_existingDataset Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testDeriveSequence_noDatasetGapped Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testDeriveSequence_noDatasetUngapped Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testDescription Test class: jalview.urls.UrlLinkDisplayTest |
0 | jalview.urls.UrlLinkDisplayTest@1ad777f | |
| testDeselectType_hideForAll Test class: jalview.gui.AnnotationChooserTest |
0 | jalview.gui.AnnotationChooserTest@63a5e46c | |
| testDeselectType_hideForSelected Test class: jalview.gui.AnnotationChooserTest |
0 | jalview.gui.AnnotationChooserTest@63a5e46c | |
| testDeselectType_showForAll Test class: jalview.gui.AnnotationChooserTest |
0 | jalview.gui.AnnotationChooserTest@63a5e46c | |
| testDeselectType_showForSelected Test class: jalview.gui.AnnotationChooserTest |
0 | jalview.gui.AnnotationChooserTest@63a5e46c | |
| testDisplayColumnNames Test class: jalview.urls.UrlLinkDisplayTest |
0 | jalview.urls.UrlLinkDisplayTest@1ad777f | |
| testDoLoad Test class: jalview.io.vcf.VCFLoaderTest |
0 | jalview.io.vcf.VCFLoaderTest@17ae98d7 | |
| testDoLoad_reverseStrand Test class: jalview.io.vcf.VCFLoaderTest |
0 | jalview.io.vcf.VCFLoaderTest@17ae98d7 | |
| testDoLoad_vepCsq Test class: jalview.io.vcf.VCFLoaderTest |
0 | jalview.io.vcf.VCFLoaderTest@17ae98d7 | |
| testDragging Test class: jalview.viewmodel.OverviewDimensionsHideHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2 | |
| testDragging Test class: jalview.viewmodel.OverviewDimensionsShowHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620 | |
| testEditable Test class: jalview.urls.UrlLinkTableModelTest |
0 | jalview.urls.UrlLinkTableModelTest@5bbbdd4b | |
| testEncodeCodon Test class: jalview.analysis.CodingUtilsTest |
0 | jalview.analysis.CodingUtilsTest@255990cc | |
| testEqualRef Test class: jalview.datamodel.DBRefEntryTest |
0 | jalview.datamodel.DBRefEntryTest@42deb43a | |
| testEquals Test class: jalview.structure.StructureCommandTest |
0 | jalview.structure.StructureCommandTest@aa5455e | |
| testEquals Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testEquals Test class: jalview.structure.StructureMappingTest |
0 | jalview.structure.StructureMappingTest@282308c3 | |
| testEquals Test class: jalview.datamodel.MatchTest |
0 | jalview.datamodel.MatchTest@4acf72b6 | |
| testEquals Test class: jalview.datamodel.PDBEntryTest |
0 | jalview.datamodel.PDBEntryTest@7561db12 | |
| testEquals Test class: jalview.datamodel.SearchResultsTest |
0 | jalview.datamodel.SearchResultsTest@15deb1dc | |
| testEquals Test class: jalview.util.CaseInsensitiveStringTest |
0 | jalview.util.CaseInsensitiveStringTest@4fdf8f12 | |
| testEquals Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testEquals Test class: jalview.math.MatrixTest |
0 | jalview.math.MatrixTest@59221b97 | |
| testEquals Test class: jalview.datamodel.AlignedCodonTest |
0 | jalview.datamodel.AlignedCodonTest@51b01960 | |
| testEquals Test class: jalview.util.matcher.MatcherTest |
0 | jalview.util.matcher.MatcherTest@2899a8db | |
| testEquals Test class: jalview.viewmodel.styles.ViewStyleTest |
0 | jalview.viewmodel.styles.ViewStyleTest@130a0f66 | |
| testEquals Test class: jalview.datamodel.ColumnSelectionTest |
0 | jalview.datamodel.ColumnSelectionTest@3ad394e6 | |
| testEqualsAndHashCode Test class: jalview.datamodel.SequenceFeatureTest |
0 | jalview.datamodel.SequenceFeatureTest@5af5def9 | |
| testEqualsAndHashCode Test class: jalview.analysis.scoremodels.ScoreMatrixTest |
0 | jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7 | |
| testEquals_distinctSequences Test class: jalview.datamodel.SearchResultsTest |
0 | jalview.datamodel.SearchResultsTest@15deb1dc | |
| testEquals_orderDiffers Test class: jalview.datamodel.SearchResultsTest |
0 | jalview.datamodel.SearchResultsTest@15deb1dc | |
| testEscapeBackslashes Test class: jalview.util.PlatformTest |
0 | jalview.util.PlatformTest@50cf5a23 | |
| testEventFiring Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testExpandContext Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testExpandContext_annotation Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testExtractCdnaProfile Test class: jalview.analysis.AAFrequencyTest |
0 | jalview.analysis.AAFrequencyTest@6e0ff644 | |
| testExtractCdnaProfile_countGaps Test class: jalview.analysis.AAFrequencyTest |
0 | jalview.analysis.AAFrequencyTest@6e0ff644 | |
| testExtractGaps Test class: jalview.analysis.AlignSeqTest |
0 | jalview.analysis.AlignSeqTest@68ed96ca | |
| testExtractGaps Test class: jalview.analysis.TestAlignSeq |
0 | jalview.analysis.TestAlignSeq@3704122f | |
| testExtractProfile Test class: jalview.analysis.AAFrequencyTest |
0 | jalview.analysis.AAFrequencyTest@6e0ff644 | |
| testExtractProfile_countGaps Test class: jalview.analysis.AAFrequencyTest |
0 | jalview.analysis.AAFrequencyTest@6e0ff644 | |
| testFeatureScoreModel Test class: jalview.analysis.scoremodels.FeatureDistanceModelTest |
0 | jalview.analysis.scoremodels.FeatureDistanceModelTest@3153ddfc | |
| testFeatureScoreModel_HiddenColumns Test class: jalview.analysis.scoremodels.FeatureDistanceModelTest |
0 | jalview.analysis.scoremodels.FeatureDistanceModelTest@3153ddfc | |
| testFeatureScoreModel_hiddenFirstColumn Test class: jalview.analysis.scoremodels.FeatureDistanceModelTest |
0 | jalview.analysis.scoremodels.FeatureDistanceModelTest@3153ddfc | |
| testFileParser Test class: jalview.ext.jmol.JmolParserTest |
0 | jalview.ext.jmol.JmolParserTest@6b739528 | |
| testFillRatio Test class: jalview.math.SparseMatrixTest |
0 | jalview.math.SparseMatrixTest@5a772895 | |
| testFilterAnnotations Test class: jalview.datamodel.ColumnSelectionTest |
0 | jalview.datamodel.ColumnSelectionTest@3ad394e6 | |
| testFilterFeaturesForDisplay Test class: jalview.renderer.seqfeatures.FeatureRendererTest |
0 | jalview.renderer.seqfeatures.FeatureRendererTest@2bffa76d | |
| testFindAlignedSequence Test class: jalview.datamodel.AlignedCodonFrameTest |
0 | jalview.datamodel.AlignedCodonFrameTest@7bd69e82 | |
| testFindAll Test class: jalview.analysis.FinderTest |
0 | jalview.analysis.FinderTest@3a7b503d | |
| testFindAllFeatures Test class: jalview.renderer.seqfeatures.FeatureRendererTest |
0 | jalview.renderer.seqfeatures.FeatureRendererTest@2bffa76d | |
| testFindAll_caseSensitive Test class: jalview.analysis.FinderTest |
0 | jalview.analysis.FinderTest@3a7b503d | |
| testFindAll_inSelection Test class: jalview.analysis.FinderTest |
0 | jalview.analysis.FinderTest@3a7b503d | |
| testFindAll_maximalResultOnly Test class: jalview.analysis.FinderTest |
0 | jalview.analysis.FinderTest@3a7b503d | |
| testFindAll_sequenceIds Test class: jalview.analysis.FinderTest |
0 | jalview.analysis.FinderTest@3a7b503d | |
| testFindAnnotation_byCalcId Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testFindAnnotations_bySeqLabelandorCalcId Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testFindAtom Test class: mc_view.ResidueTest |
0 | mc_view.ResidueTest@74518890 | |
| testFindCdsPositions Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testFindCdsPositions_fivePrimeIncomplete Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testFindColour Test class: jalview.schemes.Blosum62ColourSchemeTest |
0 | jalview.schemes.Blosum62ColourSchemeTest@6d2260db | |
| testFindColour Test class: jalview.schemes.BuriedColourSchemeTest |
0 | jalview.schemes.BuriedColourSchemeTest@1f2d2181 | |
| testFindColour Test class: jalview.schemes.ClustalxColourSchemeTest |
0 | jalview.schemes.ClustalxColourSchemeTest@49bf29c6 | |
| testFindColour Test class: jalview.schemes.HelixColourSchemeTest |
0 | jalview.schemes.HelixColourSchemeTest@46292372 | |
| testFindColour Test class: jalview.schemes.HydrophobicColourSchemeTest |
0 | jalview.schemes.HydrophobicColourSchemeTest@126be319 | |
| testFindColour Test class: jalview.schemes.PIDColourSchemeTest |
0 | jalview.schemes.PIDColourSchemeTest@5c371e13 | |
| testFindColour Test class: jalview.schemes.StrandColourSchemeTest |
0 | jalview.schemes.StrandColourSchemeTest@5215cd9a | |
| testFindColour Test class: jalview.schemes.TurnColourSchemeTest |
0 | jalview.schemes.TurnColourSchemeTest@36b6964d | |
| testFindColour_aboveThreshold Test class: jalview.schemes.AnnotationColourGradientTest |
0 | jalview.schemes.AnnotationColourGradientTest@3b718392 | |
| testFindColour_belowThreshold Test class: jalview.schemes.AnnotationColourGradientTest |
0 | jalview.schemes.AnnotationColourGradientTest@3b718392 | |
| testFindColour_gapColour Test class: jalview.renderer.ResidueShaderTest |
0 | jalview.renderer.ResidueShaderTest@2e27d72f | |
| testFindColour_ignoreGaps Test class: jalview.schemes.ClustalxColourSchemeTest |
0 | jalview.schemes.ClustalxColourSchemeTest@49bf29c6 | |
| testFindColour_ignoreGaps Test class: jalview.schemes.PIDColourSchemeTest |
0 | jalview.schemes.PIDColourSchemeTest@5c371e13 | |
| testFindColour_noThreshold Test class: jalview.schemes.AnnotationColourGradientTest |
0 | jalview.schemes.AnnotationColourGradientTest@3b718392 | |
| testFindColour_originalColours Test class: jalview.schemes.AnnotationColourGradientTest |
0 | jalview.schemes.AnnotationColourGradientTest@3b718392 | |
| testFindColumnPosition Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testFindColumn_unwrapped Test class: jalview.gui.SeqPanelTest |
0 | jalview.gui.SeqPanelTest@308a6984 | |
| testFindColumn_wrapped Test class: jalview.gui.SeqPanelTest |
0 | jalview.gui.SeqPanelTest@308a6984 | |
| testFindColumnsWithFeature Test class: jalview.controller.AlignViewControllerTest |
0 | jalview.controller.AlignViewControllerTest@2c22a348 | |
| testFindComplementFeaturesAtResidue Test class: jalview.renderer.seqfeatures.FeatureRendererTest |
0 | jalview.renderer.seqfeatures.FeatureRendererTest@2bffa76d | |
| testFindDistances Test class: jalview.analysis.scoremodels.FeatureDistanceModelTest |
0 | jalview.analysis.scoremodels.FeatureDistanceModelTest@3153ddfc | |
| testFindDistances_withParams Test class: jalview.analysis.scoremodels.FeatureDistanceModelTest |
0 | jalview.analysis.scoremodels.FeatureDistanceModelTest@3153ddfc | |
| testFindFeatureAtEnd Test class: jalview.renderer.seqfeatures.FeatureColourFinderTest |
0 | jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f | |
| testFindFeatureAt_PointFeature Test class: jalview.analysis.scoremodels.FeatureDistanceModelTest |
0 | jalview.analysis.scoremodels.FeatureDistanceModelTest@3153ddfc | |
| testFindFeatureColour_contactFeature Test class: jalview.renderer.seqfeatures.FeatureColourFinderTest |
0 | jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f | |
| testFindFeatureColour_featureGroupNotDisplayed Test class: jalview.renderer.seqfeatures.FeatureColourFinderTest |
0 | jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f | |
| testFindFeatureColour_featureTypeNotDisplayed Test class: jalview.renderer.seqfeatures.FeatureColourFinderTest |
0 | jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f | |
| testFindFeatureColour_gapPosition Test class: jalview.renderer.seqfeatures.FeatureColourFinderTest |
0 | jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f | |
| testFindFeatureColour_graduatedFeatureColour Test class: jalview.renderer.seqfeatures.FeatureColourFinderTest |
0 | jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f | |
| testFindFeatureColour_graduatedWithThreshold Test class: jalview.renderer.seqfeatures.FeatureColourFinderTest |
0 | jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f | |
| testFindFeatureColour_multipleFeaturesAtPositionNoTransparency Test class: jalview.renderer.seqfeatures.FeatureColourFinderTest |
0 | jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f | |
| testFindFeatureColour_nestedFeatures Test class: jalview.renderer.seqfeatures.FeatureColourFinderTest |
0 | jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f | |
| testFindFeatureColour_noFeatures Test class: jalview.renderer.seqfeatures.FeatureColourFinderTest |
0 | jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f | |
| testFindFeatureColour_noFeaturesShown Test class: jalview.renderer.seqfeatures.FeatureColourFinderTest |
0 | jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f | |
| testFindFeatureColour_singleFeatureAtPosition Test class: jalview.renderer.seqfeatures.FeatureColourFinderTest |
0 | jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f | |
| testFindFeatureColour_singleFeatureNotAtPosition Test class: jalview.renderer.seqfeatures.FeatureColourFinderTest |
0 | jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f | |
| testFindFeatureColour_transparencySingleFeature Test class: jalview.renderer.seqfeatures.FeatureColourFinderTest |
0 | jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f | |
| testFindFeatureColour_transparencyTwoFeatures Test class: jalview.renderer.seqfeatures.FeatureColourFinderTest |
0 | jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f | |
| testFindFeatures Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testFindFeatures Test class: jalview.datamodel.features.SequenceFeaturesTest |
0 | jalview.datamodel.features.SequenceFeaturesTest@70f43b45 | |
| testFindFeaturesAtColumn Test class: jalview.renderer.seqfeatures.FeatureRendererTest |
0 | jalview.renderer.seqfeatures.FeatureRendererTest@2bffa76d | |
| testFindFeatures_contactFeatures Test class: jalview.datamodel.features.FeatureStoreTest |
0 | jalview.datamodel.features.FeatureStoreTest@106faf11 | |
| testFindFeatures_mixed Test class: jalview.datamodel.features.FeatureStoreTest |
0 | jalview.datamodel.features.FeatureStoreTest@106faf11 | |
| testFindFeatures_nested Test class: jalview.datamodel.features.FeatureStoreTest |
0 | jalview.datamodel.features.FeatureStoreTest@106faf11 | |
| testFindFeatures_nonNested Test class: jalview.datamodel.features.FeatureStoreTest |
0 | jalview.datamodel.features.FeatureStoreTest@106faf11 | |
| testFindGroup Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testFindIndex Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testFindIndexNFromRow Test class: jalview.datamodel.HiddenSequencesTest |
0 | jalview.datamodel.HiddenSequencesTest@6754ef00 | |
| testFindIndexWithoutHiddenSeqs Test class: jalview.datamodel.HiddenSequencesTest |
0 | jalview.datamodel.HiddenSequencesTest@6754ef00 | |
| testFindIndex_withCursor Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testFindMappingsForSequence Test class: jalview.util.MappingUtilsTest |
0 | jalview.util.MappingUtilsTest@54e81b21 | |
| testFindMappingsForSequenceAndOthers Test class: jalview.util.MappingUtilsTest |
0 | jalview.util.MappingUtilsTest@54e81b21 | |
| testFindMinMax Test class: jalview.math.MatrixTest |
0 | jalview.math.MatrixTest@59221b97 | |
| testFindMinMax_timing Test class: jalview.math.MatrixTest |
0 | jalview.math.MatrixTest@59221b97 | |
| testFindMousePosition_wrapped_annotations Test class: jalview.gui.SeqPanelTest |
0 | jalview.gui.SeqPanelTest@308a6984 | |
| testFindMousePosition_wrapped_noAnnotations Test class: jalview.gui.SeqPanelTest |
0 | jalview.gui.SeqPanelTest@308a6984 | |
| testFindMousePosition_wrapped_scaleAbove Test class: jalview.gui.SeqPanelTest |
0 | jalview.gui.SeqPanelTest@308a6984 | |
| testFindNext Test class: jalview.analysis.FinderTest |
0 | jalview.analysis.FinderTest@3a7b503d | |
| testFindNext_inSelection Test class: jalview.analysis.FinderTest |
0 | jalview.analysis.FinderTest@3a7b503d | |
| testFindOrCreateForNullCalcId Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testFindOverlap Test class: jalview.util.MappingUtilsTest |
0 | jalview.util.MappingUtilsTest@54e81b21 | |
| testFindPosition Test class: jalview.datamodel.SeqCigarTest |
0 | jalview.datamodel.SeqCigarTest@6e9c413e | |
| testFindPosition Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testFindPositionMap Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testFindPosition_withCursor Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testFindPosition_withCursorAndEdits Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testFindPositions Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testFindProteinVariants Test class: jalview.datamodel.MappedFeaturesTest |
0 | jalview.datamodel.MappedFeaturesTest@619bd14c | |
| testFindRegionForColumn Test class: jalview.datamodel.HiddenColumnsCursorTest |
0 | jalview.datamodel.HiddenColumnsCursorTest@1deb2c43 | |
| testFindRegionForColumn_Visible Test class: jalview.datamodel.HiddenColumnsCursorTest |
0 | jalview.datamodel.HiddenColumnsCursorTest@1deb2c43 | |
| testFindSuperposableResidues Test class: jalview.structures.models.AAStructureBindingModelTest |
0 | jalview.structures.models.AAStructureBindingModelTest@3d9fc57a | |
| testFindSuperposableResidues_hiddenColumn Test class: jalview.structures.models.AAStructureBindingModelTest |
0 | jalview.structures.models.AAStructureBindingModelTest@3d9fc57a | |
| testFindXDbRefs Test class: jalview.analysis.CrossRefTest |
0 | jalview.analysis.CrossRefTest@3c8bdd5b | |
| testFindXrefSequences_fromDbRefMap Test class: jalview.analysis.CrossRefTest |
0 | jalview.analysis.CrossRefTest@3c8bdd5b | |
| testFindXrefSequences_indirectDbrefToNucleotide Test class: jalview.analysis.CrossRefTest |
0 | jalview.analysis.CrossRefTest@3c8bdd5b | |
| testFindXrefSequences_indirectDbrefToProtein Test class: jalview.analysis.CrossRefTest |
0 | jalview.analysis.CrossRefTest@3c8bdd5b | |
| testFindXrefSequences_noDbrefs Test class: jalview.analysis.CrossRefTest |
0 | jalview.analysis.CrossRefTest@3c8bdd5b | |
| testFindXrefSourcesForSequence_proteinToDna Test class: jalview.analysis.CrossRefTest |
0 | jalview.analysis.CrossRefTest@3c8bdd5b | |
| testFind_findAll Test class: jalview.analysis.FinderTest |
0 | jalview.analysis.FinderTest@3a7b503d | |
| testFind_findAllInSelectionWithShortSequence Test class: jalview.analysis.FinderTest |
0 | jalview.analysis.FinderTest@3a7b503d | |
| testFind_findNext Test class: jalview.analysis.FinderTest |
0 | jalview.analysis.FinderTest@3a7b503d | |
| testFind_ignoreHiddenColumns Test class: jalview.analysis.FinderTest |
0 | jalview.analysis.FinderTest@3a7b503d | |
| testFind_inDescription Test class: jalview.analysis.FinderTest |
0 | jalview.analysis.FinderTest@3a7b503d | |
| testFind_regex Test class: jalview.analysis.FinderTest |
0 | jalview.analysis.FinderTest@3a7b503d | |
| testFind_residueNumber Test class: jalview.analysis.FinderTest |
0 | jalview.analysis.FinderTest@3a7b503d | |
| testFind_withHiddenColumns Test class: jalview.analysis.FinderTest |
0 | jalview.analysis.FinderTest@3a7b503d | |
| testFind_withHiddenColumnsAndSelection Test class: jalview.analysis.FinderTest |
0 | jalview.analysis.FinderTest@3a7b503d | |
| testFlattenRanges Test class: jalview.util.MappingUtilsTest |
0 | jalview.util.MappingUtilsTest@54e81b21 | |
| testFlattenRanges_reverseStrand Test class: jalview.util.MappingUtilsTest |
0 | jalview.util.MappingUtilsTest@54e81b21 | |
| testFocusView Test class: jalview.ext.rbvi.chimera.ChimeraXCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569 | |
| testFocusView Test class: jalview.ext.rbvi.chimera.ChimeraCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9 | |
| testFocusView Test class: jalview.ext.jmol.JmolCommandsTest |
0 | jalview.ext.jmol.JmolCommandsTest@3ef41c66 | |
| testForName Test class: jalview.io.FileFormatsTest |
0 | jalview.io.FileFormatsTest@10567255 | |
| testForm_float Test class: jalview.util.FormatTest |
0 | jalview.util.FormatTest@4a67318f | |
| testFormatMessage_invalid Test class: jalview.util.MessageManagerTest |
0 | jalview.util.MessageManagerTest@6650813a | |
| testFormat_scientific Test class: jalview.util.FormatTest |
0 | jalview.util.FormatTest@4a67318f | |
| testFormat_scientific_overflow Test class: jalview.util.FormatTest |
0 | jalview.util.FormatTest@4a67318f | |
| testFromMouseWithHiddenColsAtEnd Test class: jalview.viewmodel.OverviewDimensionsHideHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2 | |
| testFromMouseWithHiddenColsAtEnd Test class: jalview.viewmodel.OverviewDimensionsShowHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620 | |
| testFromMouseWithHiddenColsAtStart Test class: jalview.viewmodel.OverviewDimensionsHideHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2 | |
| testFromMouseWithHiddenColsAtStart Test class: jalview.viewmodel.OverviewDimensionsShowHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620 | |
| testFromMouseWithHiddenColsInMiddle Test class: jalview.viewmodel.OverviewDimensionsHideHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2 | |
| testFromMouseWithHiddenColsInMiddle Test class: jalview.viewmodel.OverviewDimensionsShowHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620 | |
| testFromMouseWithHiddenRowsAtEnd Test class: jalview.viewmodel.OverviewDimensionsHideHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2 | |
| testFromMouseWithHiddenRowsAtEnd Test class: jalview.viewmodel.OverviewDimensionsShowHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620 | |
| testFromMouseWithHiddenRowsAtStart Test class: jalview.viewmodel.OverviewDimensionsHideHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2 | |
| testFromMouseWithHiddenRowsAtStart Test class: jalview.viewmodel.OverviewDimensionsShowHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620 | |
| testFromMouseWithHiddenRowsAtStartWrapped Test class: jalview.viewmodel.OverviewDimensionsShowHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620 | |
| testFromMouseWithHiddenRowsInMiddle Test class: jalview.viewmodel.OverviewDimensionsHideHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2 | |
| testFromMouseWithHiddenRowsInMiddle Test class: jalview.viewmodel.OverviewDimensionsShowHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620 | |
| testFromString Test class: jalview.datamodel.features.FeatureMatcherSetTest |
0 | jalview.datamodel.features.FeatureMatcherSetTest@33aa93c | |
| testFromString Test class: jalview.datamodel.features.FeatureMatcherTest |
0 | jalview.datamodel.features.FeatureMatcherTest@32c0915e | |
| testFromString Test class: jalview.util.matcher.ConditionTest |
0 | jalview.util.matcher.ConditionTest@3b582111 | |
| testGapBitset Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testGapMap Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testGcd Test class: jalview.util.MathUtilsTest |
0 | jalview.util.MathUtilsTest@38d5b107 | |
| testGetAWTColorFromName Test class: jalview.util.ColorUtilsTest |
0 | jalview.util.ColorUtilsTest@4a8b5227 | |
| testGetAbsoluteAlignmentHeight Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testGetAbsoluteAlignmentWidth Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testGetAccesionIdFromQuery Test class: jalview.ext.ensembl.EnsemblProteinTest |
0 | jalview.ext.ensembl.EnsemblProteinTest@53bc1328 | |
| testGetAlignmentAnnotations_forCalcIdAndLabel Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testGetAlignmentAnnotations_forCalcIdLabelAndDescription Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testGetAllFeatures Test class: jalview.datamodel.features.SequenceFeaturesTest |
0 | jalview.datamodel.features.SequenceFeaturesTest@70f43b45 | |
| testGetAnnotation Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testGetAnnotationItems Test class: jalview.gui.AnnotationRowFilterTest |
0 | jalview.gui.AnnotationRowFilterTest@6bd51ed8 | |
| testGetAnnotationTypes Test class: jalview.gui.AnnotationChooserTest |
0 | jalview.gui.AnnotationChooserTest@63a5e46c | |
| testGetAnnotation_forLabel Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testGetApplicableScoreModels Test class: jalview.gui.CalculationChooserTest |
0 | jalview.gui.CalculationChooserTest@51abf713 | |
| testGetAsArray Test class: jalview.io.TCoffeeScoreFileTest |
0 | jalview.io.TCoffeeScoreFileTest@60b85ba1 | |
| testGetAsList Test class: jalview.io.TCoffeeScoreFileTest |
0 | jalview.io.TCoffeeScoreFileTest@60b85ba1 | |
| testGetAssociatedPanels Test class: jalview.gui.PaintRefresherTest |
0 | jalview.gui.PaintRefresherTest@2e6ee0bc | |
| testGetAtomSpec Test class: jalview.ext.rbvi.chimera.ChimeraXCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569 | |
| testGetAtomSpec Test class: jalview.ext.pymol.PymolCommandsTest |
0 | jalview.ext.pymol.PymolCommandsTest@5f577419 | |
| testGetAtomSpec Test class: jalview.ext.rbvi.chimera.ChimeraCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9 | |
| testGetAtomSpec Test class: jalview.ext.jmol.JmolCommandsTest |
0 | jalview.ext.jmol.JmolCommandsTest@3ef41c66 | |
| testGetAtomSpec_alphaOnly Test class: jalview.ext.rbvi.chimera.ChimeraXCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569 | |
| testGetAtomSpec_alphaOnly Test class: jalview.ext.pymol.PymolCommandsTest |
0 | jalview.ext.pymol.PymolCommandsTest@5f577419 | |
| testGetAtomSpec_alphaOnly Test class: jalview.ext.rbvi.chimera.ChimeraCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9 | |
| testGetAttribute Test class: jalview.datamodel.features.FeatureMatcherTest |
0 | jalview.datamodel.features.FeatureMatcherTest@32c0915e | |
| testGetCanonicalAminoAcid Test class: jalview.schemes.ResiduePropertiesTest |
0 | jalview.schemes.ResiduePropertiesTest@1e34c607 | |
| testGetCanonicalName Test class: jalview.util.DBRefUtilsTest |
0 | jalview.util.DBRefUtilsTest@6979efad | |
| testGetCdsRanges Test class: jalview.ws.dbsources.EmblXmlSourceTest |
0 | jalview.ws.dbsources.EmblXmlSourceTest@2237bada | |
| testGetCharAt Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testGetChargeColour Test class: mc_view.PDBChainTest |
0 | mc_view.PDBChainTest@3c49fab6 | |
| testGetCodeTable Test class: jalview.analysis.GeneticCodesTest |
0 | jalview.analysis.GeneticCodesTest@751e664e | |
| testGetCodeTables Test class: jalview.analysis.GeneticCodesTest |
0 | jalview.analysis.GeneticCodesTest@751e664e | |
| testGetColorTooltip Test class: jalview.gui.FeatureSettingsTest |
0 | jalview.gui.FeatureSettingsTest@4d4d48a6 | |
| testGetColor_Graduated Test class: jalview.schemes.FeatureColourTest |
0 | jalview.schemes.FeatureColourTest@7668d560 | |
| testGetColor_GraduatedByAttributeValue Test class: jalview.schemes.FeatureColourTest |
0 | jalview.schemes.FeatureColourTest@7668d560 | |
| testGetColor_aboveBelowThreshold Test class: jalview.schemes.FeatureColourTest |
0 | jalview.schemes.FeatureColourTest@7668d560 | |
| testGetColor_colourByAttributeText Test class: jalview.schemes.FeatureColourTest |
0 | jalview.schemes.FeatureColourTest@7668d560 | |
| testGetColor_colourByLabel Test class: jalview.schemes.FeatureColourTest |
0 | jalview.schemes.FeatureColourTest@7668d560 | |
| testGetColor_simpleColour Test class: jalview.schemes.FeatureColourTest |
0 | jalview.schemes.FeatureColourTest@7668d560 | |
| testGetColour Test class: jalview.renderer.seqfeatures.FeatureRendererTest |
0 | jalview.renderer.seqfeatures.FeatureRendererTest@2bffa76d | |
| testGetColourBySequenceCommands_hiddenColumns Test class: jalview.ext.jmol.JmolCommandsTest |
0 | jalview.ext.jmol.JmolCommandsTest@3ef41c66 | |
| testGetColourCommand Test class: jalview.ext.rbvi.chimera.ChimeraXCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569 | |
| testGetColourCommand Test class: jalview.ext.rbvi.chimera.ChimeraCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9 | |
| testGetColourName Test class: jalview.schemes.ColourSchemePropertyTest |
0 | jalview.schemes.ColourSchemePropertyTest@7ee55e70 | |
| testGetColourScheme Test class: jalview.schemes.ColourSchemePropertyTest |
0 | jalview.schemes.ColourSchemePropertyTest@7ee55e70 | |
| testGetColourScheme Test class: jalview.schemes.ColourSchemesTest |
0 | jalview.schemes.ColourSchemesTest@3fcdcf | |
| testGetColourScheme Test class: jalview.datamodel.SequenceGroupTest |
0 | jalview.datamodel.SequenceGroupTest@3a45c42a | |
| testGetColourSchemes Test class: jalview.schemes.ColourSchemesTest |
0 | jalview.schemes.ColourSchemesTest@3fcdcf | |
| testGetComplement Test class: jalview.analysis.DnaTest |
0 | jalview.analysis.DnaTest@29d2d081 | |
| testGetConsensusSeq Test class: jalview.gui.AlignViewportTest |
0 | jalview.gui.AlignViewportTest@437e951d | |
| testGetContactFeatures Test class: jalview.datamodel.features.SequenceFeaturesTest |
0 | jalview.datamodel.features.SequenceFeaturesTest@70f43b45 | |
| testGetCoveringCodonMapping Test class: jalview.datamodel.AlignedCodonFrameTest |
0 | jalview.datamodel.AlignedCodonFrameTest@7bd69e82 | |
| testGetCoveringMapping Test class: jalview.datamodel.AlignedCodonFrameTest |
0 | jalview.datamodel.AlignedCodonFrameTest@7bd69e82 | |
| testGetCrossReferences Test class: jalview.ext.ensembl.EnsemblXrefTest |
0 | jalview.ext.ensembl.EnsemblXrefTest@4b770e40 | |
| testGetDefaultRnaHelixSymbol Test class: jalview.datamodel.AlignmentAnnotationTests |
0 | jalview.datamodel.AlignmentAnnotationTests@6831d8fd | |
| testGetDescription Test class: jalview.ws.dbsources.UniprotTest |
0 | jalview.ws.dbsources.UniprotTest@30272916 | |
| testGetDescription Test class: jalview.schemes.FeatureColourTest |
0 | jalview.schemes.FeatureColourTest@7668d560 | |
| testGetDescription Test class: jalview.io.gff.Gff3HelperTest |
0 | jalview.io.gff.Gff3HelperTest@3add81c4 | |
| testGetDescription Test class: jalview.datamodel.features.FeatureAttributesTest |
0 | jalview.datamodel.features.FeatureAttributesTest@7692cd34 | |
| testGetDetailsReport Test class: jalview.datamodel.SequenceFeatureTest |
0 | jalview.datamodel.SequenceFeatureTest@5af5def9 | |
| testGetDetailsReport_virtualFeature Test class: jalview.datamodel.SequenceFeatureTest |
0 | jalview.datamodel.SequenceFeatureTest@5af5def9 | |
| testGetDssp3State Test class: jalview.schemes.ResiduePropertiesTest |
0 | jalview.schemes.ResiduePropertiesTest@1e34c607 | |
| testGetEditStatusMessage Test class: jalview.gui.SeqPanelTest |
0 | jalview.gui.SeqPanelTest@308a6984 | |
| testGetEditStatusMessage_lockedEditing Test class: jalview.gui.SeqPanelTest |
0 | jalview.gui.SeqPanelTest@308a6984 | |
| testGetEmblEntries Test class: jalview.ws.dbsources.EmblXmlSourceTest |
0 | jalview.ws.dbsources.EmblXmlSourceTest@2237bada | |
| testGetExtension Test class: jalview.io.JalviewFileViewTest |
0 | jalview.io.JalviewFileViewTest@62577d6 | |
| testGetFeatureColourScheme Test class: jalview.ext.ensembl.EnsemblGeneTest |
0 | jalview.ext.ensembl.EnsemblGeneTest@7bfc3126 | |
| testGetFeatureCount Test class: jalview.datamodel.features.SequenceFeaturesTest |
0 | jalview.datamodel.features.SequenceFeaturesTest@70f43b45 | |
| testGetFeatureGroups Test class: jalview.datamodel.features.FeatureStoreTest |
0 | jalview.datamodel.features.FeatureStoreTest@106faf11 | |
| testGetFeatureGroups Test class: jalview.datamodel.features.SequenceFeaturesTest |
0 | jalview.datamodel.features.SequenceFeaturesTest@70f43b45 | |
| testGetFeatureLength Test class: jalview.datamodel.features.FeatureStoreTest |
0 | jalview.datamodel.features.FeatureStoreTest@106faf11 | |
| testGetFeatureTypes Test class: jalview.datamodel.features.SequenceFeaturesTest |
0 | jalview.datamodel.features.SequenceFeaturesTest@70f43b45 | |
| testGetFeatureTypesForGroups Test class: jalview.datamodel.features.SequenceFeaturesTest |
0 | jalview.datamodel.features.SequenceFeaturesTest@70f43b45 | |
| testGetFeatureTypes_byOntology Test class: jalview.datamodel.features.SequenceFeaturesTest |
0 | jalview.datamodel.features.SequenceFeaturesTest@70f43b45 | |
| testGetFeaturesByOntology Test class: jalview.datamodel.features.SequenceFeaturesTest |
0 | jalview.datamodel.features.SequenceFeaturesTest@70f43b45 | |
| testGetFeaturesForGroup Test class: jalview.datamodel.features.FeatureStoreTest |
0 | jalview.datamodel.features.FeatureStoreTest@106faf11 | |
| testGetFeaturesForGroup Test class: jalview.datamodel.features.SequenceFeaturesTest |
0 | jalview.datamodel.features.SequenceFeaturesTest@70f43b45 | |
| testGetFormats Test class: jalview.io.FileFormatsTest |
0 | jalview.io.FileFormatsTest@10567255 | |
| testGetFromRatio Test class: jalview.datamodel.MappingTypeTest |
0 | jalview.datamodel.MappingTypeTest@a23a01d | |
| testGetFullAlignment Test class: jalview.datamodel.HiddenSequencesTest |
0 | jalview.datamodel.HiddenSequencesTest@6754ef00 | |
| testGetGenomicRangesFromFeatures Test class: jalview.ext.ensembl.EnsemblCdnaTest |
0 | jalview.ext.ensembl.EnsemblCdnaTest@2c282004 | |
| testGetGenomicRangesFromFeatures Test class: jalview.ext.ensembl.EnsemblCdsTest |
0 | jalview.ext.ensembl.EnsemblCdsTest@22ee2d0 | |
| testGetGenomicRangesFromFeatures Test class: jalview.ext.ensembl.EnsemblGeneTest |
0 | jalview.ext.ensembl.EnsemblGeneTest@7bfc3126 | |
| testGetGenomicRangesFromFeatures Test class: jalview.ext.ensembl.EnsemblGenomeTest |
0 | jalview.ext.ensembl.EnsemblGenomeTest@3e792ce3 | |
| testGetGenomicRangesFromFeatures_mixedStrand Test class: jalview.ext.ensembl.EnsemblCdnaTest |
0 | jalview.ext.ensembl.EnsemblCdnaTest@2c282004 | |
| testGetGenomicRangesFromFeatures_ncRNA_gene_reverseStrand Test class: jalview.ext.ensembl.EnsemblGeneTest |
0 | jalview.ext.ensembl.EnsemblGeneTest@7bfc3126 | |
| testGetGenomicRangesFromFeatures_reverseStrand Test class: jalview.ext.ensembl.EnsemblCdnaTest |
0 | jalview.ext.ensembl.EnsemblCdnaTest@2c282004 | |
| testGetGraduatedColour Test class: jalview.util.ColorUtilsTest |
0 | jalview.util.ColorUtilsTest@4a8b5227 | |
| testGetHelixMap_oneHelix Test class: jalview.analysis.RnaTest |
0 | jalview.analysis.RnaTest@4d0402b | |
| testGetHelixMap_twoHelices Test class: jalview.analysis.RnaTest |
0 | jalview.analysis.RnaTest@4d0402b | |
| testGetHelper Test class: jalview.io.gff.GffHelperFactoryTest |
0 | jalview.io.gff.GffHelperFactoryTest@1c65121 | |
| testGetHiddenSequence Test class: jalview.datamodel.HiddenSequencesTest |
0 | jalview.datamodel.HiddenSequencesTest@6754ef00 | |
| testGetIdentifyingFeatures Test class: jalview.ext.ensembl.EnsemblCdnaTest |
0 | jalview.ext.ensembl.EnsemblCdnaTest@2c282004 | |
| testGetIdentifyingFeatures Test class: jalview.ext.ensembl.EnsemblCdsTest |
0 | jalview.ext.ensembl.EnsemblCdsTest@22ee2d0 | |
| testGetIdentifyingFeatures Test class: jalview.ext.ensembl.EnsemblGeneTest |
0 | jalview.ext.ensembl.EnsemblGeneTest@7bfc3126 | |
| testGetIdentifyingFeatures Test class: jalview.ext.ensembl.EnsemblGenomeTest |
0 | jalview.ext.ensembl.EnsemblGenomeTest@3e792ce3 | |
| testGetImageIcon Test class: jalview.io.JalviewFileViewTest |
0 | jalview.io.JalviewFileViewTest@62577d6 | |
| testGetInverse Test class: jalview.datamodel.MappingTypeTest |
0 | jalview.datamodel.MappingTypeTest@a23a01d | |
| testGetInverse Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testGetLastToken Test class: jalview.util.StringUtilsTest |
0 | jalview.util.StringUtilsTest@632aa1a3 | |
| testGetLength Test class: jalview.util.MappingUtilsTest |
0 | jalview.util.MappingUtilsTest@54e81b21 | |
| testGetMappedCodons Test class: jalview.datamodel.AlignedCodonFrameTest |
0 | jalview.datamodel.AlignedCodonFrameTest@7bd69e82 | |
| testGetMappedCodons_dnaVariants Test class: jalview.datamodel.AlignedCodonFrameTest |
0 | jalview.datamodel.AlignedCodonFrameTest@7bd69e82 | |
| testGetMappedCodons_forSubSequences Test class: jalview.datamodel.AlignedCodonFrameTest |
0 | jalview.datamodel.AlignedCodonFrameTest@7bd69e82 | |
| testGetMappedOffsetsForPositions Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testGetMappedRegion Test class: jalview.datamodel.AlignedCodonFrameTest |
0 | jalview.datamodel.AlignedCodonFrameTest@7bd69e82 | |
| testGetMappedRegion_eitherWay Test class: jalview.datamodel.AlignedCodonFrameTest |
0 | jalview.datamodel.AlignedCodonFrameTest@7bd69e82 | |
| testGetMappingForS1 Test class: jalview.analysis.TestAlignSeq |
0 | jalview.analysis.TestAlignSeq@3704122f | |
| testGetMappingType Test class: jalview.io.gff.ExonerateHelperTest |
0 | jalview.io.gff.ExonerateHelperTest@d71adc2 | |
| testGetMatcher Test class: jalview.datamodel.features.FeatureMatcherTest |
0 | jalview.datamodel.features.FeatureMatcherTest@32c0915e | |
| testGetMatchers Test class: jalview.datamodel.features.FeatureMatcherSetTest |
0 | jalview.datamodel.features.FeatureMatcherSetTest@33aa93c | |
| testGetMatchingOpeningParenthesis Test class: jalview.analysis.RnaTest |
0 | jalview.analysis.RnaTest@4d0402b | |
| testGetMatrix Test class: jalview.analysis.scoremodels.ScoreMatrixTest |
0 | jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7 | |
| testGetMatrixIndex Test class: jalview.analysis.scoremodels.ScoreMatrixTest |
0 | jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7 | |
| testGetMaximumScore Test class: jalview.analysis.scoremodels.ScoreMatrixTest |
0 | jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7 | |
| testGetMemorySetting Test class: jalview.bin.MemorySettingTest |
0 | jalview.bin.MemorySettingTest@3abd581e | |
| testGetMinMax Test class: jalview.datamodel.features.FeatureAttributesTest |
0 | jalview.datamodel.features.FeatureAttributesTest@7692cd34 | |
| testGetMinimumScore Test class: jalview.analysis.scoremodels.ScoreMatrixTest |
0 | jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7 | |
| testGetMinimumScore_getMaximumScore Test class: jalview.datamodel.features.FeatureStoreTest |
0 | jalview.datamodel.features.FeatureStoreTest@106faf11 | |
| testGetMinimumScore_getMaximumScore Test class: jalview.datamodel.features.SequenceFeaturesTest |
0 | jalview.datamodel.features.SequenceFeaturesTest@70f43b45 | |
| testGetModalCount Test class: jalview.datamodel.ResidueCountTest |
0 | jalview.datamodel.ResidueCountTest@24b52d3e | |
| testGetModelStartNo Test class: jalview.ext.rbvi.chimera.ChimeraXCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569 | |
| testGetModelStartNo Test class: jalview.ext.pymol.PymolCommandsTest |
0 | jalview.ext.pymol.PymolCommandsTest@5f577419 | |
| testGetModelStartNo Test class: jalview.ext.rbvi.chimera.ChimeraCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9 | |
| testGetModelStartNo Test class: jalview.ext.jmol.JmolCommandsTest |
0 | jalview.ext.jmol.JmolCommandsTest@3ef41c66 | |
| testGetName Test class: jalview.schemes.ResidueColourSchemeTest |
0 | jalview.schemes.ResidueColourSchemeTest@530a8454 | |
| testGetNewlineString Test class: mc_view.PDBChainTest |
0 | mc_view.PDBChainTest@3c49fab6 | |
| testGetNextHiddenBoundary_Left Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testGetNextHiddenBoundary_Right Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testGetNonPositionalFeatures Test class: jalview.datamodel.features.SequenceFeaturesTest |
0 | jalview.datamodel.features.SequenceFeaturesTest@70f43b45 | |
| testGetOverlapsInFrom_withIntrons Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testGetOverlapsInTo_withIntrons Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testGetPDBResNumRanges Test class: jalview.structure.StructureMappingTest |
0 | jalview.structure.StructureMappingTest@282308c3 | |
| testGetPairwiseScore Test class: jalview.analysis.scoremodels.PIDModelTest |
0 | jalview.analysis.scoremodels.PIDModelTest@60afd40d | |
| testGetPairwiseScore Test class: jalview.analysis.scoremodels.ScoreMatrixTest |
0 | jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7 | |
| testGetPositionalFeatures Test class: jalview.datamodel.features.FeatureStoreTest |
0 | jalview.datamodel.features.FeatureStoreTest@106faf11 | |
| testGetPositionalFeatures Test class: jalview.datamodel.features.SequenceFeaturesTest |
0 | jalview.datamodel.features.SequenceFeaturesTest@70f43b45 | |
| testGetPositionsForOffsets Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testGetPostRequest Test class: jalview.ext.pymol.PymolManagerTest |
0 | jalview.ext.pymol.PymolManagerTest@28fa700e | |
| testGetPrimaryDBRefs_nucleotide Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testGetPrimaryDBRefs_peptide Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testGetPymolPaths Test class: jalview.ext.pymol.PymolManagerTest |
0 | jalview.ext.pymol.PymolManagerTest@28fa700e | |
| testGetRNASecStrucState Test class: jalview.analysis.RnaTest |
0 | jalview.analysis.RnaTest@4d0402b | |
| testGetRanges Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testGetRanges Test class: jalview.structure.AtomSpecModelTest |
0 | jalview.structure.AtomSpecModelTest@9257031 | |
| testGetReadableFormats Test class: jalview.io.FileFormatsTest |
0 | jalview.io.FileFormatsTest@10567255 | |
| testGetRegionWithEdgeAtRes Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testGetResidueAttributes Test class: jalview.ext.rbvi.chimera.ChimeraCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9 | |
| testGetResidueBoxColour_none Test class: jalview.renderer.OverviewResColourFinderTest |
0 | jalview.renderer.OverviewResColourFinderTest@5d332969 | |
| testGetResidueBoxColour_userdef Test class: jalview.renderer.OverviewResColourFinderTest |
0 | jalview.renderer.OverviewResColourFinderTest@5d332969 | |
| testGetResidueBoxColour_zappo Test class: jalview.renderer.OverviewResColourFinderTest |
0 | jalview.renderer.OverviewResColourFinderTest@5d332969 | |
| testGetResidueColour_WithGroup Test class: jalview.gui.SequenceRendererTest |
0 | jalview.gui.SequenceRendererTest@66b72664 | |
| testGetResidueColour_none Test class: jalview.renderer.ResidueColourFinderTest |
0 | jalview.renderer.ResidueColourFinderTest@7cc9ce8 | |
| testGetResidueColour_userdef Test class: jalview.renderer.ResidueColourFinderTest |
0 | jalview.renderer.ResidueColourFinderTest@7cc9ce8 | |
| testGetResidueColour_zappo Test class: jalview.renderer.ResidueColourFinderTest |
0 | jalview.renderer.ResidueColourFinderTest@7cc9ce8 | |
| testGetResidueSpec Test class: jalview.ext.rbvi.chimera.ChimeraXCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569 | |
| testGetResidueSpec Test class: jalview.ext.pymol.PymolCommandsTest |
0 | jalview.ext.pymol.PymolCommandsTest@5f577419 | |
| testGetResidueSpec Test class: jalview.ext.rbvi.chimera.ChimeraCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9 | |
| testGetResiduesForCount Test class: jalview.datamodel.ResidueCountTest |
0 | jalview.datamodel.ResidueCountTest@24b52d3e | |
| testGetResidues_nucleotide Test class: jalview.schemes.ResiduePropertiesTest |
0 | jalview.schemes.ResiduePropertiesTest@1e34c607 | |
| testGetResidues_peptide Test class: jalview.schemes.ResiduePropertiesTest |
0 | jalview.schemes.ResiduePropertiesTest@1e34c607 | |
| testGetRestClient Test class: jalview.ws.rest.RestClientTest |
0 | jalview.ws.rest.RestClientTest@51671b08 | |
| testGetRotation Test class: jalview.math.RotatableMatrixTest |
0 | jalview.math.RotatableMatrixTest@6ac4944a | |
| testGetRowIndex Test class: jalview.gui.AnnotationPanelTest |
0 | jalview.gui.AnnotationPanelTest@271f18d3 | |
| testGetSchemeClass Test class: jalview.schemes.JalviewColourSchemeTest |
0 | jalview.schemes.JalviewColourSchemeTest@6c44052e | |
| testGetScoresFromDescription Test class: jalview.analysis.ParsePropertiesTest |
0 | jalview.analysis.ParsePropertiesTest@182b435b | |
| testGetScoresFromDescription_twoScores Test class: jalview.analysis.ParsePropertiesTest |
0 | jalview.analysis.ParsePropertiesTest@182b435b | |
| testGetScoresFromDescription_wordBoundaries Test class: jalview.analysis.ParsePropertiesTest |
0 | jalview.analysis.ParsePropertiesTest@182b435b | |
| testGetScrollBarProportion Test class: jalview.gui.JvSwingUtilsTest |
0 | jalview.gui.JvSwingUtilsTest@1e287667 | |
| testGetScrollValueForProportion Test class: jalview.gui.JvSwingUtilsTest |
0 | jalview.gui.JvSwingUtilsTest@1e287667 | |
| testGetSelected Test class: jalview.datamodel.ColumnSelectionTest |
0 | jalview.datamodel.ColumnSelectionTest@3ad394e6 | |
| testGetSelectedRanges Test class: jalview.datamodel.ColumnSelectionTest |
0 | jalview.datamodel.ColumnSelectionTest@3ad394e6 | |
| testGetSelectedResidues Test class: jalview.ext.rbvi.chimera.ChimeraXCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569 | |
| testGetSelectedResidues Test class: jalview.ext.rbvi.chimera.ChimeraCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9 | |
| testGetSelected_concurrentModification Test class: jalview.datamodel.ColumnSelectionTest |
java.util.ConcurrentModificationException at java.base/java.util.ArrayList$Itr.checkForComodification(ArrayList.java:1043) at java.base/java.util.ArrayList$Itr.next(ArrayList.java:997) at java.base/java.util.Collections$UnmodifiableCollection$1.next(Collections.java:1047) at jalview.datamodel.ColumnSelectionTest.testGetSelected_concurrentModification(ColumnSelectionTest.java:428) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.util.ConcurrentModificationException at java.base/java.util.ArrayList$Itr.checkForComodification(ArrayList.java:1043) at java.base/java.util.ArrayList$Itr.next(ArrayList.java:997) at java.base/java.util.Collections$UnmodifiableCollection$1.next(Collections.java:1047) at jalview.datamodel.ColumnSelectionTest.testGetSelected_concurrentModification(ColumnSelectionTest.java:428) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.datamodel.ColumnSelectionTest@3ad394e6 |
| testGetSelected_isReadOnly Test class: jalview.datamodel.ColumnSelectionTest |
0 | jalview.datamodel.ColumnSelectionTest@3ad394e6 | |
| testGetSequence Test class: jalview.ws.dbsources.EmblXmlSourceTest |
0 | jalview.ws.dbsources.EmblXmlSourceTest@2237bada | |
| testGetSequence Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testGetSequenceFeatures Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testGetSequenceProxy Test class: jalview.ext.htsjdk.TestHtsContigDb |
0 | jalview.ext.htsjdk.TestHtsContigDb@54a3ab8f | |
| testGetSequenceProxy_indexed Test class: jalview.ext.htsjdk.TestHtsContigDb |
java.lang.IllegalArgumentException: File is not a supported reference file type: /home/thomas/Studium/Master_2/java-hiwi/jalview/test/jalview/ext/htsjdk/pgmB.fasta.fai at htsjdk.samtools.reference.ReferenceSequenceFileFactory.lambda$getFastaExtension$0(ReferenceSequenceFileFactory.java:253) at java.base/java.util.Optional.orElseGet(Optional.java:369) at htsjdk.samtools.reference.ReferenceSequenceFileFactory.getFastaExtension(ReferenceSequenceFileFactory.java:253) at htsjdk.samtools.reference.ReferenceSequenceFileFactory.getReferenceSequenceFile(ReferenceSequenceFileFactory.java:135) at htsjdk.samtools.reference.ReferenceSequenceFileFactory.getReferenceSequenceFile(ReferenceSequenceFileFactory.java:100) at htsjdk.samtools.reference.ReferenceSequenceFileFactory.getReferenceSequenceFile(ReferenceSequenceFileFactory.java:88) at jalview.ext.htsjdk.HtsContigDb.initSource(HtsContigDb.java:104) at jalview.ext.htsjdk.HtsContigDb.<init>(HtsContigDb.java:79) at jalview.ext.htsjdk.TestHtsContigDb.testGetSequenceProxy_indexed(TestHtsContigDb.java:77) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.lang.IllegalArgumentException: File is not a supported reference file type: /home/thomas/Studium/Master_2/java-hiwi/jalview/test/jalview/ext/htsjdk/pgmB.fasta.fai at htsjdk.samtools.reference.ReferenceSequenceFileFactory.lambda$getFastaExtension$0(ReferenceSequenceFileFactory.java:253) at java.base/java.util.Optional.orElseGet(Optional.java:369) at htsjdk.samtools.reference.ReferenceSequenceFileFactory.getFastaExtension(ReferenceSequenceFileFactory.java:253) at htsjdk.samtools.reference.ReferenceSequenceFileFactory.getReferenceSequenceFile(ReferenceSequenceFileFactory.java:135) at htsjdk.samtools.reference.ReferenceSequenceFileFactory.getReferenceSequenceFile(ReferenceSequenceFileFactory.java:100) at htsjdk.samtools.reference.ReferenceSequenceFileFactory.getReferenceSequenceFile(ReferenceSequenceFileFactory.java:88) at jalview.ext.htsjdk.HtsContigDb.initSource(HtsContigDb.java:104) at jalview.ext.htsjdk.HtsContigDb.<init>(HtsContigDb.java:79) at jalview.ext.htsjdk.TestHtsContigDb.testGetSequenceProxy_indexed(TestHtsContigDb.java:77) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.ext.htsjdk.TestHtsContigDb@54a3ab8f |
| testGetSequencesByName Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testGetSequencesForPdbs Test class: jalview.gui.StructureViewerTest |
0 | jalview.gui.StructureViewerTest@58cd06cb | |
| testGetSetValue Test class: jalview.urls.UrlLinkDisplayTest |
0 | jalview.urls.UrlLinkDisplayTest@1ad777f | |
| testGetShownHiddenTypes_forSelectionGroup Test class: jalview.analysis.AlignmentAnnotationUtilsTest |
0 | jalview.analysis.AlignmentAnnotationUtilsTest@6d1310f6 | |
| testGetShownHiddenTypes_noSequenceSelected Test class: jalview.analysis.AlignmentAnnotationUtilsTest |
0 | jalview.analysis.AlignmentAnnotationUtilsTest@6d1310f6 | |
| testGetShownHiddenTypes_withGraphGroups Test class: jalview.analysis.AlignmentAnnotationUtilsTest |
0 | jalview.analysis.AlignmentAnnotationUtilsTest@6d1310f6 | |
| testGetSimpleBPs Test class: jalview.analysis.RnaTest |
0 | jalview.analysis.RnaTest@4d0402b | |
| testGetSimpleBPs_unmatchedCloser Test class: jalview.analysis.RnaTest |
0 | jalview.analysis.RnaTest@4d0402b | |
| testGetSimpleBPs_unmatchedOpener Test class: jalview.analysis.RnaTest |
0 | jalview.analysis.RnaTest@4d0402b | |
| testGetSingleCharacterCode Test class: jalview.schemes.ResiduePropertiesTest |
0 | jalview.schemes.ResiduePropertiesTest@1e34c607 | |
| testGetSize Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testGetSize Test class: jalview.datamodel.HiddenSequencesTest |
0 | jalview.datamodel.HiddenSequencesTest@6754ef00 | |
| testGetSize Test class: jalview.analysis.scoremodels.ScoreMatrixTest |
0 | jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7 | |
| testGetStableName Test class: jalview.util.matcher.ConditionTest |
0 | jalview.util.matcher.ConditionTest@3b582111 | |
| testGetStartGetEnd Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testGetStatusMessage Test class: jalview.gui.AnnotationLabelsTest |
0 | jalview.gui.AnnotationLabelsTest@49ef32e0 | |
| testGetStrand Test class: jalview.datamodel.SequenceFeatureTest |
0 | jalview.datamodel.SequenceFeatureTest@5af5def9 | |
| testGetStringOrReturn Test class: jalview.util.MessageManagerTest |
0 | jalview.util.MessageManagerTest@6650813a | |
| testGetString_invalid Test class: jalview.util.MessageManagerTest |
0 | jalview.util.MessageManagerTest@6650813a | |
| testGetSubsequence Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testGetSymbolCounts_nucleotide Test class: jalview.datamodel.ResidueCountTest |
0 | jalview.datamodel.ResidueCountTest@24b52d3e | |
| testGetSymbolCounts_peptide Test class: jalview.datamodel.ResidueCountTest |
0 | jalview.datamodel.ResidueCountTest@24b52d3e | |
| testGetToRatio Test class: jalview.datamodel.MappingTypeTest |
0 | jalview.datamodel.MappingTypeTest@a23a01d | |
| testGetTooltip Test class: jalview.datamodel.ResidueCountTest |
0 | jalview.datamodel.ResidueCountTest@24b52d3e | |
| testGetTooltip Test class: jalview.gui.AnnotationLabelsTest |
0 | jalview.gui.AnnotationLabelsTest@49ef32e0 | |
| testGetTotalFeatureLength Test class: jalview.datamodel.features.FeatureStoreTest |
0 | jalview.datamodel.features.FeatureStoreTest@106faf11 | |
| testGetTotalFeatureLength Test class: jalview.datamodel.features.SequenceFeaturesTest |
0 | jalview.datamodel.features.SequenceFeaturesTest@70f43b45 | |
| testGetTranscriptFeatures Test class: jalview.ext.ensembl.EnsemblGeneTest |
0 | jalview.ext.ensembl.EnsemblGeneTest@7bfc3126 | |
| testGetType Test class: jalview.datamodel.PDBEntryTest |
0 | jalview.datamodel.PDBEntryTest@7561db12 | |
| testGetTypeDescription Test class: jalview.io.JalviewFileViewTest |
0 | jalview.io.JalviewFileViewTest@62577d6 | |
| testGetURL Test class: jalview.ws.dbsources.RfamFullTest |
0 | jalview.ws.dbsources.RfamFullTest@6e0d4a8 | |
| testGetURL Test class: jalview.ws.dbsources.RfamSeedTest |
0 | jalview.ws.dbsources.RfamSeedTest@64d7b720 | |
| testGetURL Test class: jalview.ws.dbsources.PfamFullTest |
0 | jalview.ws.dbsources.PfamFullTest@77e2a6e2 | |
| testGetURL Test class: jalview.ws.dbsources.PfamSeedTest |
0 | jalview.ws.dbsources.PfamSeedTest@5710768a | |
| testGetUniprotEntries Test class: jalview.ws.dbsources.UniprotTest |
0 | jalview.ws.dbsources.UniprotTest@30272916 | |
| testGetUniprotEntryDescription Test class: jalview.ws.dbsources.UniprotTest |
0 | jalview.ws.dbsources.UniprotTest@30272916 | |
| testGetUniprotEntryId Test class: jalview.ws.dbsources.UniprotTest |
0 | jalview.ws.dbsources.UniprotTest@30272916 | |
| testGetUniprotSequence Test class: jalview.ws.dbsources.UniprotTest |
0 | jalview.ws.dbsources.UniprotTest@30272916 | |
| testGetValue Test class: jalview.datamodel.SequenceFeatureTest |
0 | jalview.datamodel.SequenceFeatureTest@5af5def9 | |
| testGetValue Test class: jalview.bin.ArgsParserTest |
0 | jalview.bin.ArgsParserTest@10b3df93 | |
| testGetValue_decoded Test class: jalview.bin.ArgsParserTest |
0 | jalview.bin.ArgsParserTest@10b3df93 | |
| testGetVisibleAlignmentGapChar Test class: jalview.datamodel.AlignmentViewTest |
0 | jalview.datamodel.AlignmentViewTest@6b85300e | |
| testGetVisibleColsIterator Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testGetVisibleContigs Test class: jalview.datamodel.AlignmentViewTest |
0 | jalview.datamodel.AlignmentViewTest@6b85300e | |
| testGetVisibleGraphGroups Test class: jalview.analysis.AlignmentAnnotationUtilsTest |
0 | jalview.analysis.AlignmentAnnotationUtilsTest@6d1310f6 | |
| testGetVisibleStartAndEndIndex Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testGetVisibleWidth Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testGetWidth Test class: jalview.datamodel.HiddenSequencesTest |
0 | jalview.datamodel.HiddenSequencesTest@6754ef00 | |
| testGetWidth Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testGetWrappedMaxScroll Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testGetWrappedScrollPosition Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testGetWritableFormats Test class: jalview.io.FileFormatsTest |
0 | jalview.io.FileFormatsTest@10567255 | |
| testGrpParsed Test class: jalview.io.JSONFileTest |
0 | jalview.io.JSONFileTest@54336c81 | |
| testGrpParsed_colourNone Test class: jalview.io.JSONFileTest |
0 | jalview.io.JSONFileTest@54336c81 | |
| testGzipIo Test class: jalview.io.FileIOTester |
0 | jalview.io.FileIOTester@e362c57 | |
| testGziplocalFileIO Test class: jalview.io.FileIOTester |
0 | jalview.io.FileIOTester@e362c57 | |
| testHasCrossRef Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testHasFeatures Test class: jalview.datamodel.features.SequenceFeaturesTest |
0 | jalview.datamodel.features.SequenceFeaturesTest@70f43b45 | |
| testHasHiddenColumns Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testHasManyHiddenColumns Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testHasNextAndNext Test class: jalview.datamodel.AllColsIteratorTest |
0 | jalview.datamodel.AllColsIteratorTest@5cbf9e9f | |
| testHasNextAndNext Test class: jalview.datamodel.AllRowsIteratorTest |
0 | jalview.datamodel.AllRowsIteratorTest@18e8473e | |
| testHasNextAndNextEndHidden Test class: jalview.datamodel.RangeElementsIteratorTest |
0 | jalview.datamodel.RangeElementsIteratorTest@3301500b | |
| testHasNextAndNextEndHidden Test class: jalview.datamodel.VisibleRowsIteratorTest |
0 | jalview.datamodel.VisibleRowsIteratorTest@27a0a5a2 | |
| testHasNextAndNextNoHidden Test class: jalview.datamodel.RangeElementsIteratorTest |
0 | jalview.datamodel.RangeElementsIteratorTest@3301500b | |
| testHasNextAndNextNoHidden Test class: jalview.datamodel.VisibleRowsIteratorTest |
0 | jalview.datamodel.VisibleRowsIteratorTest@27a0a5a2 | |
| testHasNextAndNextStartHidden Test class: jalview.datamodel.RangeElementsIteratorTest |
0 | jalview.datamodel.RangeElementsIteratorTest@3301500b | |
| testHasNextAndNextStartHidden Test class: jalview.datamodel.VisibleRowsIteratorTest |
0 | jalview.datamodel.VisibleRowsIteratorTest@27a0a5a2 | |
| testHasNextAndNextWithHidden Test class: jalview.datamodel.RangeElementsIteratorTest |
0 | jalview.datamodel.RangeElementsIteratorTest@3301500b | |
| testHasNextAndNextWithHidden Test class: jalview.datamodel.VisibleRowsIteratorTest |
0 | jalview.datamodel.VisibleRowsIteratorTest@27a0a5a2 | |
| testHashCode Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testHashCode Test class: jalview.util.matcher.MatcherTest |
0 | jalview.util.matcher.MatcherTest@2899a8db | |
| testHashcode Test class: jalview.datamodel.SearchResultsTest |
0 | jalview.datamodel.SearchResultsTest@15deb1dc | |
| testHashcode Test class: jalview.util.CaseInsensitiveStringTest |
0 | jalview.util.CaseInsensitiveStringTest@4fdf8f12 | |
| testHaveCrossRef Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testHeadlessModeOutputOperations Test class: jalview.bin.CommandLineOperations Parameters: nodisplay -open examples/uniref50.fa, -eps, test/jalview/bin/test_uniref50_out.eps, true, 4096, 13000 |
2 | jalview.bin.CommandLineOperations@33c2bd | |
| testHeadlessModeOutputOperations Test class: jalview.bin.CommandLineOperations Parameters: nodisplay -open examples/uniref50.fa, -eps, test/jalview/bin/test_uniref50_out.eps, false, 4096, 13000 |
2 | jalview.bin.CommandLineOperations@33c2bd | |
| testHeadlessModeOutputOperations Test class: jalview.bin.CommandLineOperations Parameters: nogui -open examples/uniref50.fa, -eps, test/jalview/bin/test_uniref50_out.eps, true, 4096, 13000 |
2 | jalview.bin.CommandLineOperations@33c2bd | |
| testHeadlessModeOutputOperations Test class: jalview.bin.CommandLineOperations Parameters: nogui -open examples/uniref50.fa, -eps, test/jalview/bin/test_uniref50_out.eps, false, 4096, 13000 |
2 | jalview.bin.CommandLineOperations@33c2bd | |
| testHeadlessModeOutputOperations Test class: jalview.bin.CommandLineOperations Parameters: headless -open examples/uniref50.fa, -eps, test/jalview/bin/test_uniref50_out.eps, true, 4096, 13000 |
2 | jalview.bin.CommandLineOperations@33c2bd | |
| testHeadlessModeOutputOperations Test class: jalview.bin.CommandLineOperations Parameters: headless -open examples/uniref50.fa, -svg, test/jalview/bin/test_uniref50_out.svg, false, 4096, 13000 |
2 | jalview.bin.CommandLineOperations@33c2bd | |
| testHeadlessModeOutputOperations Test class: jalview.bin.CommandLineOperations Parameters: headless -open examples/uniref50.fa, -png, test/jalview/bin/test_uniref50_out.png, true, 4096, 13000 |
2 | jalview.bin.CommandLineOperations@33c2bd | |
| testHeadlessModeOutputOperations Test class: jalview.bin.CommandLineOperations Parameters: headless -open examples/uniref50.fa, -html, test/jalview/bin/test_uniref50_out.html, true, 4096, 13000 |
2 | jalview.bin.CommandLineOperations@33c2bd | |
| testHeadlessModeOutputOperations Test class: jalview.bin.CommandLineOperations Parameters: headless -open examples/uniref50.fa, -fasta, test/jalview/bin/test_uniref50_out.mfa, true, 2096, 13000 |
2 | jalview.bin.CommandLineOperations@33c2bd | |
| testHeadlessModeOutputOperations Test class: jalview.bin.CommandLineOperations Parameters: headless -open examples/uniref50.fa, -clustal, test/jalview/bin/test_uniref50_out.aln, true, 2096, 13000 |
2 | jalview.bin.CommandLineOperations@33c2bd | |
| testHeadlessModeOutputOperations Test class: jalview.bin.CommandLineOperations Parameters: headless -open examples/uniref50.fa, -msf, test/jalview/bin/test_uniref50_out.msf, true, 2096, 13000 |
2 | jalview.bin.CommandLineOperations@33c2bd | |
| testHeadlessModeOutputOperations Test class: jalview.bin.CommandLineOperations Parameters: headless -open examples/uniref50.fa, -pileup, test/jalview/bin/test_uniref50_out.aln, true, 2096, 13000 |
2 | jalview.bin.CommandLineOperations@33c2bd | |
| testHeadlessModeOutputOperations Test class: jalview.bin.CommandLineOperations Parameters: headless -open examples/uniref50.fa, -pir, test/jalview/bin/test_uniref50_out.pir, true, 2096, 13000 |
2 | jalview.bin.CommandLineOperations@33c2bd | |
| testHeadlessModeOutputOperations Test class: jalview.bin.CommandLineOperations Parameters: headless -open examples/uniref50.fa, -pfam, test/jalview/bin/test_uniref50_out.pfam, true, 2096, 13000 |
2 | jalview.bin.CommandLineOperations@33c2bd | |
| testHeadlessModeOutputOperations Test class: jalview.bin.CommandLineOperations Parameters: headless -open examples/uniref50.fa, -blc, test/jalview/bin/test_uniref50_out.blc, true, 2096, 13000 |
2 | jalview.bin.CommandLineOperations@33c2bd | |
| testHeadlessModeOutputOperations Test class: jalview.bin.CommandLineOperations Parameters: headless -open examples/uniref50.fa, -jalview, test/jalview/bin/test_uniref50_out.jvp, true, 2096, 13000 |
2 | jalview.bin.CommandLineOperations@33c2bd | |
| testHeightAndWidth Test class: jalview.io.TCoffeeScoreFileTest |
0 | jalview.io.TCoffeeScoreFileTest@60b85ba1 | |
| testHeightAndWidthWithResidueNumbers Test class: jalview.io.TCoffeeScoreFileTest |
0 | jalview.io.TCoffeeScoreFileTest@60b85ba1 | |
| testHiDPISettingInit Test class: jalview.bin.HiDPISettingTest1 |
0 | jalview.bin.HiDPISettingTest1@1dfd5f51 | |
| testHiDPISettings Test class: jalview.bin.HiDPISettingTest2 Parameters: 1 |
1 | jalview.bin.HiDPISettingTest2@3c321bdb | |
| testHiDPISettings Test class: jalview.bin.HiDPISettingTest2 Parameters: 2 |
1 | jalview.bin.HiDPISettingTest2@3c321bdb | |
| testHiDPISettings Test class: jalview.bin.HiDPISettingTest2 Parameters: 4 |
1 | jalview.bin.HiDPISettingTest2@3c321bdb | |
| testHiDPISettings Test class: jalview.bin.HiDPISettingTest2 Parameters: 10 |
1 | jalview.bin.HiDPISettingTest2@3c321bdb | |
| testHideColumns Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testHideColumns_BitSet Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testHideColumns_BitSet_range Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testHideColumns_subsumingHidden Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testHideColumns_withSelection Test class: jalview.datamodel.ColumnSelectionTest |
0 | jalview.datamodel.ColumnSelectionTest@3ad394e6 | |
| testHideFeatureColumns Test class: jalview.gui.AlignFrameTest |
0 | jalview.gui.AlignFrameTest@f325091 | |
| testHideInsertions Test class: jalview.gui.PopupMenuTest |
0 | jalview.gui.PopupMenuTest@467f77a5 | |
| testHideInsertionsFor Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testHideRevealSequences Test class: jalview.gui.AlignViewportTest |
0 | jalview.gui.AlignViewportTest@437e951d | |
| testHideSelectedColumns Test class: jalview.datamodel.ColumnSelectionTest |
0 | jalview.datamodel.ColumnSelectionTest@3ad394e6 | |
| testHideShowLastSequences Test class: jalview.datamodel.HiddenSequencesTest |
0 | jalview.datamodel.HiddenSequencesTest@6754ef00 | |
| testHideShowSequence Test class: jalview.datamodel.HiddenSequencesTest |
0 | jalview.datamodel.HiddenSequencesTest@6754ef00 | |
| testHideShowSequence_withHiddenRepSequence Test class: jalview.datamodel.HiddenSequencesTest |
0 | jalview.datamodel.HiddenSequencesTest@6754ef00 | |
| testIdentify Test class: jalview.io.IdentifyFileTest Parameters: examples/example.json, Json |
0 | jalview.io.IdentifyFileTest@e27ba81 | |
| testIdentify Test class: jalview.io.IdentifyFileTest Parameters: examples/plantfdx.fa, Fasta |
0 | jalview.io.IdentifyFileTest@e27ba81 | |
| testIdentify Test class: jalview.io.IdentifyFileTest Parameters: examples/dna_interleaved.phy, Phylip |
0 | jalview.io.IdentifyFileTest@e27ba81 | |
| testIdentify Test class: jalview.io.IdentifyFileTest Parameters: examples/2GIS.pdb, PDB |
0 | jalview.io.IdentifyFileTest@e27ba81 | |
| testIdentify Test class: jalview.io.IdentifyFileTest Parameters: examples/RF00031_folded.stk, Stockholm |
0 | jalview.io.IdentifyFileTest@e27ba81 | |
| testIdentify Test class: jalview.io.IdentifyFileTest Parameters: examples/testdata/test.rnaml, Rnaml |
0 | jalview.io.IdentifyFileTest@e27ba81 | |
| testIdentify Test class: jalview.io.IdentifyFileTest Parameters: examples/testdata/test.aln, Clustal |
0 | jalview.io.IdentifyFileTest@e27ba81 | |
| testIdentify Test class: jalview.io.IdentifyFileTest Parameters: examples/testdata/test.pfam, Pfam |
0 | jalview.io.IdentifyFileTest@e27ba81 | |
| testIdentify Test class: jalview.io.IdentifyFileTest Parameters: examples/testdata/test.msf, MSF |
0 | jalview.io.IdentifyFileTest@e27ba81 | |
| testIdentify Test class: jalview.io.IdentifyFileTest Parameters: examples/testdata/test.pir, PIR |
0 | jalview.io.IdentifyFileTest@e27ba81 | |
| testIdentify Test class: jalview.io.IdentifyFileTest Parameters: examples/testdata/test.html, Html |
0 | jalview.io.IdentifyFileTest@e27ba81 | |
| testIdentify Test class: jalview.io.IdentifyFileTest Parameters: examples/testdata/test.pileup, Pileup |
0 | jalview.io.IdentifyFileTest@e27ba81 | |
| testIdentify Test class: jalview.io.IdentifyFileTest Parameters: examples/testdata/test.blc, BLC |
0 | jalview.io.IdentifyFileTest@e27ba81 | |
| testIdentify Test class: jalview.io.IdentifyFileTest Parameters: test/jalview/io/J03321.embl.txt, Embl |
0 | jalview.io.IdentifyFileTest@e27ba81 | |
| testIdentify Test class: jalview.io.IdentifyFileTest Parameters: test/jalview/io/J03321.gb, GenBank |
0 | jalview.io.IdentifyFileTest@e27ba81 | |
| testIdentify Test class: jalview.io.IdentifyFileTest Parameters: examples/exampleFeatures.txt, Features |
0 | jalview.io.IdentifyFileTest@e27ba81 | |
| testIdentify Test class: jalview.io.IdentifyFileTest Parameters: examples/testdata/simpleGff3.gff, Features |
0 | jalview.io.IdentifyFileTest@e27ba81 | |
| testIdentify Test class: jalview.io.IdentifyFileTest Parameters: examples/testdata/test.jvp, Jalview |
0 | jalview.io.IdentifyFileTest@e27ba81 | |
| testIdentify Test class: jalview.io.IdentifyFileTest Parameters: examples/testdata/test.cif, MMCif |
0 | jalview.io.IdentifyFileTest@e27ba81 | |
| testIdentify Test class: jalview.io.IdentifyFileTest Parameters: examples/testdata/cullpdb_pc25_res3.0_R0.3_d150729_chains9361.fasta.15316, Fasta |
0 | jalview.io.IdentifyFileTest@e27ba81 | |
| testIdentify Test class: jalview.io.IdentifyFileTest Parameters: resources/scoreModel/pam250.scm, ScoreMatrix |
0 | jalview.io.IdentifyFileTest@e27ba81 | |
| testIdentify Test class: jalview.io.IdentifyFileTest Parameters: resources/scoreModel/blosum80.scm, ScoreMatrix |
0 | jalview.io.IdentifyFileTest@e27ba81 | |
| testIdentify_featureFile Test class: jalview.io.IdentifyFileTest |
0 | jalview.io.IdentifyFileTest@e27ba81 | |
| testImportExportPeriodGaps Test class: jalview.io.JalviewExportPropertiesTests |
0 | jalview.io.JalviewExportPropertiesTests@35e52059 | |
| testImportPDBPreservesChainMappings Test class: jalview.structures.models.AAStructureBindingModelTest |
0 | jalview.structures.models.AAStructureBindingModelTest@3d9fc57a | |
| testIndexEncode_nucleotide Test class: jalview.analysis.AlignSeqTest |
0 | jalview.analysis.AlignSeqTest@68ed96ca | |
| testIndexEncode_peptide Test class: jalview.analysis.AlignSeqTest |
0 | jalview.analysis.AlignSeqTest@68ed96ca | |
| testInitUrlProvider Test class: jalview.urls.UrlProviderTest |
0 | jalview.urls.UrlProviderTest@438bad7c | |
| testInitialisation Test class: jalview.urls.UrlLinkTableModelTest |
0 | jalview.urls.UrlLinkTableModelTest@5bbbdd4b | |
| testInsertCharAt Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testInsertCharAt Test class: jalview.util.StringUtilsTest |
0 | jalview.util.StringUtilsTest@632aa1a3 | |
| testInsertGapsAndGapmaps Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testInterleavedDataExtraction Test class: jalview.io.PhylipFileTests |
0 | jalview.io.PhylipFileTests@79ab3a71 | |
| testInterleavedIO Test class: jalview.io.PhylipFileTests |
0 | jalview.io.PhylipFileTests@79ab3a71 | |
| testIntersectVisContigs Test class: jalview.datamodel.MappingTest |
0 | jalview.datamodel.MappingTest@323e8306 | |
| testInvertColumnSelection Test class: jalview.datamodel.ColumnSelectionTest |
0 | jalview.datamodel.ColumnSelectionTest@3ad394e6 | |
| testInvolvesSequence Test class: jalview.datamodel.SearchResultsTest |
0 | jalview.datamodel.SearchResultsTest@15deb1dc | |
| testIsA Test class: jalview.ext.so.SequenceOntologyTest |
0 | jalview.ext.so.SequenceOntologyTest@3f3c966c | |
| testIsA_sequenceVariant Test class: jalview.io.gff.SequenceOntologyLiteTest |
0 | jalview.io.gff.SequenceOntologyLiteTest@24528a25 | |
| testIsApplicableTo Test class: jalview.schemes.ResidueColourSchemeTest |
0 | jalview.schemes.ResidueColourSchemeTest@530a8454 | |
| testIsApplicableTo_dynamicColourScheme Test class: jalview.schemes.ResidueColourSchemeTest |
0 | jalview.schemes.ResidueColourSchemeTest@530a8454 | |
| testIsByAttribute Test class: jalview.datamodel.features.FeatureMatcherTest |
0 | jalview.datamodel.features.FeatureMatcherTest@32c0915e | |
| testIsByLabel Test class: jalview.datamodel.features.FeatureMatcherTest |
0 | jalview.datamodel.features.FeatureMatcherTest@32c0915e | |
| testIsByScore Test class: jalview.datamodel.features.FeatureMatcherTest |
0 | jalview.datamodel.features.FeatureMatcherTest@32c0915e | |
| testIsCDS Test class: jalview.ext.so.SequenceOntologyTest |
0 | jalview.ext.so.SequenceOntologyTest@3f3c966c | |
| testIsCanonicalOrWobblePair Test class: jalview.analysis.RnaTest |
0 | jalview.analysis.RnaTest@4d0402b | |
| testIsCanonicalPair Test class: jalview.analysis.RnaTest |
0 | jalview.analysis.RnaTest@4d0402b | |
| testIsClosingParenthesis Test class: jalview.analysis.RnaTest |
0 | jalview.analysis.RnaTest@4d0402b | |
| testIsContactFeature Test class: jalview.datamodel.SequenceFeatureTest |
0 | jalview.datamodel.SequenceFeatureTest@5af5def9 | |
| testIsControlDown_mac Test class: jalview.util.PlatformTest |
0 | jalview.util.PlatformTest@50cf5a23 | |
| testIsControlDown_notMac Test class: jalview.util.PlatformTest |
0 | jalview.util.PlatformTest@50cf5a23 | |
| testIsEditable Test class: jalview.urls.UrlLinkDisplayTest |
0 | jalview.urls.UrlLinkDisplayTest@1ad777f | |
| testIsEmpty Test class: jalview.datamodel.features.FeatureMatcherSetTest |
0 | jalview.datamodel.features.FeatureMatcherSetTest@33aa93c | |
| testIsEmpty Test class: jalview.datamodel.features.FeatureStoreTest |
0 | jalview.datamodel.features.FeatureStoreTest@106faf11 | |
| testIsFromForwardStrand Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testIsGap Test class: jalview.util.ComparisonTest |
0 | jalview.util.ComparisonTest@54f5f647 | |
| testIsGzipInputStream Test class: jalview.io.FileIOTester |
0 | jalview.io.FileIOTester@e362c57 | |
| testIsHidden Test class: jalview.datamodel.HiddenSequencesTest |
0 | jalview.datamodel.HiddenSequencesTest@6754ef00 | |
| testIsIdentifiable Test class: jalview.io.FileFormatsTest |
0 | jalview.io.FileFormatsTest@10567255 | |
| testIsInActionScope_selectedScope Test class: jalview.gui.AnnotationChooserTest |
0 | jalview.gui.AnnotationChooserTest@63a5e46c | |
| testIsInActionScope_unselectedScope Test class: jalview.gui.AnnotationChooserTest |
0 | jalview.gui.AnnotationChooserTest@63a5e46c | |
| testIsMappable Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testIsNucleotide Test class: jalview.util.ComparisonTest |
0 | jalview.util.ComparisonTest@54f5f647 | |
| testIsNucleotideSequence Test class: jalview.util.ComparisonTest |
0 | jalview.util.ComparisonTest@54f5f647 | |
| testIsNucleotide_sequences Test class: jalview.util.ComparisonTest |
0 | jalview.util.ComparisonTest@54f5f647 | |
| testIsOntologyTerm Test class: jalview.datamodel.features.SequenceFeaturesTest |
0 | jalview.datamodel.features.SequenceFeaturesTest@70f43b45 | |
| testIsOpeningParenthesis Test class: jalview.analysis.RnaTest |
0 | jalview.analysis.RnaTest@4d0402b | |
| testIsOutwithThreshold Test class: jalview.schemes.FeatureColourTest |
0 | jalview.schemes.FeatureColourTest@7668d560 | |
| testIsPrimaryCandidate Test class: jalview.datamodel.DBRefEntryTest |
0 | jalview.datamodel.DBRefEntryTest@42deb43a | |
| testIsProtein Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testIsProteinWithXorNAmbiguityCodes Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testIsQuantitative Test class: jalview.datamodel.AlignmentAnnotationTests |
0 | jalview.datamodel.AlignmentAnnotationTests@6831d8fd | |
| testIsRealisableWith Test class: jalview.datamodel.AlignedCodonFrameTest |
0 | jalview.datamodel.AlignedCodonFrameTest@7bd69e82 | |
| testIsRna Test class: mc_view.PDBfileTest |
0 | mc_view.PDBfileTest@515f4131 | |
| testIsRnaSecondaryStructureSymbol Test class: jalview.analysis.RnaTest |
0 | jalview.analysis.RnaTest@4d0402b | |
| testIsSameResidue Test class: jalview.util.ComparisonTest |
0 | jalview.util.ComparisonTest@54f5f647 | |
| testIsSequenceVariant Test class: jalview.ext.so.SequenceOntologyTest |
0 | jalview.ext.so.SequenceOntologyTest@3f3c966c | |
| testIsSymmetric Test class: jalview.analysis.scoremodels.ScoreMatrixTest |
0 | jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7 | |
| testIsToForwardsStrand Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testIsValidReference Test class: jalview.ext.ensembl.EnsemblCdnaTest |
0 | jalview.ext.ensembl.EnsemblCdnaTest@2c282004 | |
| testIsValidReference Test class: jalview.ext.ensembl.EnsemblCdsTest |
0 | jalview.ext.ensembl.EnsemblCdsTest@22ee2d0 | |
| testIsValidReference Test class: jalview.ext.ensembl.EnsemblProteinTest |
0 | jalview.ext.ensembl.EnsemblProteinTest@53bc1328 | |
| testIsVersionStringLaterThan Test class: jalview.project.Jalview2xmlTests |
0 | jalview.project.Jalview2xmlTests@39fc6b2c | |
| testIsVisible Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testIsVisible Test class: jalview.renderer.seqfeatures.FeatureRendererTest |
0 | jalview.renderer.seqfeatures.FeatureRendererTest@2bffa76d | |
| testIterator Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testJalviewProjectRelocationAnnotation Test class: jalview.io.AnnotatedPDBFileInputTest |
0 | jalview.io.AnnotatedPDBFileInputTest@64b31700 | |
| testKeyAt_ValueAt Test class: jalview.util.SparseCountTest |
0 | jalview.util.SparseCountTest@1af1347d | |
| testLastNext Test class: jalview.datamodel.AllColsIteratorTest |
java.util.NoSuchElementException at jalview.datamodel.AllColsIterator.next(AllColsIterator.java:60) at jalview.datamodel.AllColsIteratorTest.testLastNext(AllColsIteratorTest.java:72) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.util.NoSuchElementException at jalview.datamodel.AllColsIterator.next(AllColsIterator.java:60) at jalview.datamodel.AllColsIteratorTest.testLastNext(AllColsIteratorTest.java:72) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.datamodel.AllColsIteratorTest@5cbf9e9f |
| testLastNext Test class: jalview.datamodel.AllRowsIteratorTest |
java.util.NoSuchElementException at jalview.datamodel.AllRowsIterator.next(AllRowsIterator.java:62) at jalview.datamodel.AllRowsIteratorTest.testLastNext(AllRowsIteratorTest.java:83) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.util.NoSuchElementException at jalview.datamodel.AllRowsIterator.next(AllRowsIterator.java:62) at jalview.datamodel.AllRowsIteratorTest.testLastNext(AllRowsIteratorTest.java:83) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.datamodel.AllRowsIteratorTest@18e8473e |
| testLastNextEndHidden Test class: jalview.datamodel.RangeElementsIteratorTest |
java.util.NoSuchElementException at jalview.datamodel.RangeElementsIterator.next(RangeElementsIterator.java:68) at jalview.datamodel.RangeElementsIterator.next(RangeElementsIterator.java:34) at jalview.datamodel.RangeElementsIteratorTest.testLastNextEndHidden(RangeElementsIteratorTest.java:192) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.util.NoSuchElementException at jalview.datamodel.RangeElementsIterator.next(RangeElementsIterator.java:68) at jalview.datamodel.RangeElementsIterator.next(RangeElementsIterator.java:34) at jalview.datamodel.RangeElementsIteratorTest.testLastNextEndHidden(RangeElementsIteratorTest.java:192) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.datamodel.RangeElementsIteratorTest@3301500b |
| testLastNextEndHidden Test class: jalview.datamodel.VisibleRowsIteratorTest |
java.util.NoSuchElementException at jalview.datamodel.VisibleRowsIterator.next(VisibleRowsIterator.java:84) at jalview.datamodel.VisibleRowsIteratorTest.testLastNextEndHidden(VisibleRowsIteratorTest.java:208) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.util.NoSuchElementException at jalview.datamodel.VisibleRowsIterator.next(VisibleRowsIterator.java:84) at jalview.datamodel.VisibleRowsIteratorTest.testLastNextEndHidden(VisibleRowsIteratorTest.java:208) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.datamodel.VisibleRowsIteratorTest@27a0a5a2 |
| testLastNextNoHidden Test class: jalview.datamodel.RangeElementsIteratorTest |
java.util.NoSuchElementException at jalview.datamodel.RangeElementsIterator.next(RangeElementsIterator.java:68) at jalview.datamodel.RangeElementsIterator.next(RangeElementsIterator.java:34) at jalview.datamodel.RangeElementsIteratorTest.testLastNextNoHidden(RangeElementsIteratorTest.java:154) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.util.NoSuchElementException at jalview.datamodel.RangeElementsIterator.next(RangeElementsIterator.java:68) at jalview.datamodel.RangeElementsIterator.next(RangeElementsIterator.java:34) at jalview.datamodel.RangeElementsIteratorTest.testLastNextNoHidden(RangeElementsIteratorTest.java:154) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.datamodel.RangeElementsIteratorTest@3301500b |
| testLastNextNoHidden Test class: jalview.datamodel.VisibleRowsIteratorTest |
java.util.NoSuchElementException at jalview.datamodel.VisibleRowsIterator.next(VisibleRowsIterator.java:84) at jalview.datamodel.VisibleRowsIteratorTest.testLastNextNoHidden(VisibleRowsIteratorTest.java:170) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.util.NoSuchElementException at jalview.datamodel.VisibleRowsIterator.next(VisibleRowsIterator.java:84) at jalview.datamodel.VisibleRowsIteratorTest.testLastNextNoHidden(VisibleRowsIteratorTest.java:170) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.datamodel.VisibleRowsIteratorTest@27a0a5a2 |
| testLastNextStartHidden Test class: jalview.datamodel.RangeElementsIteratorTest |
java.util.NoSuchElementException at jalview.datamodel.RangeElementsIterator.next(RangeElementsIterator.java:68) at jalview.datamodel.RangeElementsIterator.next(RangeElementsIterator.java:34) at jalview.datamodel.RangeElementsIteratorTest.testLastNextStartHidden(RangeElementsIteratorTest.java:173) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.util.NoSuchElementException at jalview.datamodel.RangeElementsIterator.next(RangeElementsIterator.java:68) at jalview.datamodel.RangeElementsIterator.next(RangeElementsIterator.java:34) at jalview.datamodel.RangeElementsIteratorTest.testLastNextStartHidden(RangeElementsIteratorTest.java:173) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.datamodel.RangeElementsIteratorTest@3301500b |
| testLastNextStartHidden Test class: jalview.datamodel.VisibleRowsIteratorTest |
java.util.NoSuchElementException at jalview.datamodel.VisibleRowsIterator.next(VisibleRowsIterator.java:84) at jalview.datamodel.VisibleRowsIteratorTest.testLastNextStartHidden(VisibleRowsIteratorTest.java:189) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.util.NoSuchElementException at jalview.datamodel.VisibleRowsIterator.next(VisibleRowsIterator.java:84) at jalview.datamodel.VisibleRowsIteratorTest.testLastNextStartHidden(VisibleRowsIteratorTest.java:189) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.datamodel.VisibleRowsIteratorTest@27a0a5a2 |
| testLastNextWithHidden Test class: jalview.datamodel.RangeElementsIteratorTest |
java.util.NoSuchElementException at jalview.datamodel.RangeElementsIterator.next(RangeElementsIterator.java:68) at jalview.datamodel.RangeElementsIterator.next(RangeElementsIterator.java:34) at jalview.datamodel.RangeElementsIteratorTest.testLastNextWithHidden(RangeElementsIteratorTest.java:134) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.util.NoSuchElementException at jalview.datamodel.RangeElementsIterator.next(RangeElementsIterator.java:68) at jalview.datamodel.RangeElementsIterator.next(RangeElementsIterator.java:34) at jalview.datamodel.RangeElementsIteratorTest.testLastNextWithHidden(RangeElementsIteratorTest.java:134) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.datamodel.RangeElementsIteratorTest@3301500b |
| testLastNextWithHidden Test class: jalview.datamodel.VisibleRowsIteratorTest |
java.util.NoSuchElementException at jalview.datamodel.VisibleRowsIterator.next(VisibleRowsIterator.java:84) at jalview.datamodel.VisibleRowsIteratorTest.testLastNextWithHidden(VisibleRowsIteratorTest.java:151) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.util.NoSuchElementException at jalview.datamodel.VisibleRowsIterator.next(VisibleRowsIterator.java:84) at jalview.datamodel.VisibleRowsIteratorTest.testLastNextWithHidden(VisibleRowsIteratorTest.java:151) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.datamodel.VisibleRowsIteratorTest@27a0a5a2 |
| testLiftOver Test class: jalview.datamodel.AlignmentAnnotationTests |
0 | jalview.datamodel.AlignmentAnnotationTests@6831d8fd | |
| testLinkComparator Test class: jalview.util.UrlLinkTest |
0 | jalview.util.UrlLinkTest@20765ed5 | |
| testLinksWithTargets Test class: jalview.util.UrlLinkTest |
0 | jalview.util.UrlLinkTest@20765ed5 | |
| testListContains Test class: jalview.datamodel.features.FeatureStoreTest |
0 | jalview.datamodel.features.FeatureStoreTest@106faf11 | |
| testListResidueAttributes Test class: jalview.ext.rbvi.chimera.ChimeraXCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569 | |
| testListResidueAttributes Test class: jalview.ext.rbvi.chimera.ChimeraCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9 | |
| testListToDelimitedString Test class: jalview.util.StringUtilsTest |
0 | jalview.util.StringUtilsTest@632aa1a3 | |
| testLoadFile Test class: jalview.ext.pymol.PymolCommandsTest |
0 | jalview.ext.pymol.PymolCommandsTest@5f577419 | |
| testLoadFile Test class: jalview.ext.rbvi.chimera.ChimeraCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9 | |
| testLoadFile Test class: jalview.ext.jmol.JmolCommandsTest |
0 | jalview.ext.jmol.JmolCommandsTest@3ef41c66 | |
| testLoadVCFContig Test class: jalview.io.vcf.VCFLoaderTest |
0 | jalview.io.vcf.VCFLoaderTest@17ae98d7 | |
| testLocalPDBId Test class: jalview.ext.jmol.JmolParserTest |
0 | jalview.ext.jmol.JmolParserTest@6b739528 | |
| testLocateInFrom_noIntrons Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testLocateInFrom_reverseStrand Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testLocateInFrom_withIntrons Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testLocateInFrom_withOverlap Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testLocateInTo_noIntrons Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testLocateInTo_withIntrons Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testLocateInTo_withOverlap Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testLocateVisibleStartofSequence Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testLog4j Test class: jalview.util.Log4jTest |
1 | jalview.util.Log4jTest@17f9344b | |
| testLooksLikeFeatureData Test class: jalview.io.IdentifyFileTest |
0 | jalview.io.IdentifyFileTest@e27ba81 | |
| testMakeAttributeName Test class: jalview.ext.rbvi.chimera.ChimeraCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9 | |
| testMakeBond Test class: mc_view.PDBChainTest |
0 | mc_view.PDBChainTest@3c49fab6 | |
| testMakeCaBondList Test class: mc_view.PDBChainTest |
0 | mc_view.PDBChainTest@3c49fab6 | |
| testMakeCaBondList_nucleotide Test class: mc_view.PDBChainTest |
0 | mc_view.PDBChainTest@3c49fab6 | |
| testMakeCdsAlignment Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testMakeCdsAlignment_alternativeTranscripts Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testMakeCdsAlignment_filterProducts Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testMakeCdsAlignment_multipleProteins Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testMakeExactMapping Test class: mc_view.PDBChainTest |
0 | mc_view.PDBChainTest@3c49fab6 | |
| testMakeGroupsWithBoth Test class: jalview.analysis.GroupingTest |
0 | jalview.analysis.GroupingTest@160c3ec1 | |
| testMakeResidueList_noAnnotation Test class: mc_view.PDBChainTest |
0 | mc_view.PDBChainTest@3c49fab6 | |
| testMakeResidueList_withTempFactor Test class: mc_view.PDBChainTest |
0 | mc_view.PDBChainTest@3c49fab6 | |
| testMakeUrlNoRegex Test class: jalview.util.UrlLinkTest |
0 | jalview.util.UrlLinkTest@20765ed5 | |
| testMakeUrlWithRegex Test class: jalview.util.UrlLinkTest |
0 | jalview.util.UrlLinkTest@20765ed5 | |
| testMakeVisibleAnnotation Test class: jalview.datamodel.AlignmentAnnotationTests |
0 | jalview.datamodel.AlignmentAnnotationTests@6831d8fd | |
| testMapCdnaToProtein_forSubsequence Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testMapCdsToProtein Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testMapColumnSelection_dnaToProtein Test class: jalview.util.MappingUtilsTest |
0 | jalview.util.MappingUtilsTest@54e81b21 | |
| testMapColumnSelection_hiddenColumns Test class: jalview.util.MappingUtilsTest |
0 | jalview.util.MappingUtilsTest@54e81b21 | |
| testMapColumnSelection_null Test class: jalview.util.MappingUtilsTest |
0 | jalview.util.MappingUtilsTest@54e81b21 | |
| testMapColumnSelection_proteinToDna Test class: jalview.util.MappingUtilsTest |
0 | jalview.util.MappingUtilsTest@54e81b21 | |
| testMapEditCommand Test class: jalview.util.MappingUtilsTest |
0 | jalview.util.MappingUtilsTest@54e81b21 | |
| testMapProteinAlignmentToCdna_noXrefs Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testMapProteinAlignmentToCdna_prioritiseXrefs Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testMapProteinAlignmentToCdna_withStartAndStopCodons Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testMapProteinAlignmentToCdna_withXrefs Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testMapSequenceGroup_columns Test class: jalview.util.MappingUtilsTest |
0 | jalview.util.MappingUtilsTest@54e81b21 | |
| testMapSequenceGroup_region Test class: jalview.util.MappingUtilsTest |
0 | jalview.util.MappingUtilsTest@54e81b21 | |
| testMapSequenceGroup_sequences Test class: jalview.util.MappingUtilsTest |
0 | jalview.util.MappingUtilsTest@54e81b21 | |
| testMapSequenceGroup_sharedDataset Test class: jalview.util.MappingUtilsTest |
0 | jalview.util.MappingUtilsTest@54e81b21 | |
| testMarkColumns Test class: jalview.datamodel.SearchResultsTest |
0 | jalview.datamodel.SearchResultsTest@15deb1dc | |
| testMarkColumns Test class: jalview.datamodel.ColumnSelectionTest |
0 | jalview.datamodel.ColumnSelectionTest@3ad394e6 | |
| testMarkColumns_extend Test class: jalview.datamodel.ColumnSelectionTest |
0 | jalview.datamodel.ColumnSelectionTest@3ad394e6 | |
| testMarkColumns_invert Test class: jalview.datamodel.ColumnSelectionTest |
0 | jalview.datamodel.ColumnSelectionTest@3ad394e6 | |
| testMarkColumns_toggle Test class: jalview.datamodel.ColumnSelectionTest |
0 | jalview.datamodel.ColumnSelectionTest@3ad394e6 | |
| testMarkMappedRegion Test class: jalview.datamodel.AlignedCodonFrameTest |
0 | jalview.datamodel.AlignedCodonFrameTest@7bd69e82 | |
| testMatchConstructor Test class: jalview.datamodel.SearchResultsTest |
0 | jalview.datamodel.SearchResultsTest@15deb1dc | |
| testMatchContains Test class: jalview.datamodel.SearchResultsTest |
0 | jalview.datamodel.SearchResultsTest@15deb1dc | |
| testMatches_byAttribute Test class: jalview.datamodel.features.FeatureMatcherSetTest |
0 | jalview.datamodel.features.FeatureMatcherSetTest@33aa93c | |
| testMatches_byAttribute Test class: jalview.datamodel.features.FeatureMatcherTest |
0 | jalview.datamodel.features.FeatureMatcherTest@32c0915e | |
| testMatches_byLabel Test class: jalview.datamodel.features.FeatureMatcherTest |
0 | jalview.datamodel.features.FeatureMatcherTest@32c0915e | |
| testMatches_byScore Test class: jalview.datamodel.features.FeatureMatcherTest |
0 | jalview.datamodel.features.FeatureMatcherTest@32c0915e | |
| testMatches_compoundKey Test class: jalview.datamodel.features.FeatureMatcherSetTest |
0 | jalview.datamodel.features.FeatureMatcherSetTest@33aa93c | |
| testMatches_float Test class: jalview.util.matcher.MatcherTest |
0 | jalview.util.matcher.MatcherTest@2899a8db | |
| testMatches_floatValueIntegerCondition Test class: jalview.util.matcher.MatcherTest |
0 | jalview.util.matcher.MatcherTest@2899a8db | |
| testMatches_floatWithStringCondition Test class: jalview.util.matcher.MatcherTest |
0 | jalview.util.matcher.MatcherTest@2899a8db | |
| testMatches_long Test class: jalview.util.matcher.MatcherTest |
0 | jalview.util.matcher.MatcherTest@2899a8db | |
| testMatches_pattern Test class: jalview.util.matcher.MatcherTest |
0 | jalview.util.matcher.MatcherTest@2899a8db | |
| testMax Test class: jalview.datamodel.features.FeatureStoreTest |
0 | jalview.datamodel.features.FeatureStoreTest@106faf11 | |
| testMaxColumnSelection Test class: jalview.datamodel.ColumnSelectionTest |
0 | jalview.datamodel.ColumnSelectionTest@3ad394e6 | |
| testMergeDatasetsforManyViews Test class: jalview.project.Jalview2xmlTests |
0 | jalview.project.Jalview2xmlTests@39fc6b2c | |
| testMergeDatasetsforViews Test class: jalview.project.Jalview2xmlTests |
0 | jalview.project.Jalview2xmlTests@39fc6b2c | |
| testMin Test class: jalview.datamodel.features.FeatureStoreTest |
0 | jalview.datamodel.features.FeatureStoreTest@106faf11 | |
| testMinColumnSelection Test class: jalview.datamodel.ColumnSelectionTest |
0 | jalview.datamodel.ColumnSelectionTest@3ad394e6 | |
| testMockTDBRequest Test class: jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest |
0 | jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest@3a71c100 | |
| testMultipleVisibleRegions Test class: jalview.datamodel.VisibleContigsIteratorTest |
0 | jalview.datamodel.VisibleContigsIteratorTest@33d05366 | |
| testMultiply Test class: jalview.math.MatrixTest |
0 | jalview.math.MatrixTest@59221b97 | |
| testName Test class: jalview.urls.UrlLinkDisplayTest |
0 | jalview.urls.UrlLinkDisplayTest@1ad777f | |
| testNameExists Test class: jalview.schemes.ColourSchemesTest |
0 | jalview.schemes.ColourSchemesTest@3fcdcf | |
| testNewView_colourThresholds Test class: jalview.gui.AlignFrameTest |
0 | jalview.gui.AlignFrameTest@f325091 | |
| testNewView_dsRefPreserved Test class: jalview.gui.AlignFrameTest |
0 | jalview.gui.AlignFrameTest@f325091 | |
| testNext Test class: jalview.datamodel.AlignedCodonIteratorTest |
0 | jalview.datamodel.AlignedCodonIteratorTest@74d7184a | |
| testNextValue Test class: jalview.bin.ArgsParserTest |
0 | jalview.bin.ArgsParserTest@10b3df93 | |
| testNext_incompleteCodon Test class: jalview.datamodel.AlignedCodonIteratorTest |
0 | jalview.datamodel.AlignedCodonIteratorTest@74d7184a | |
| testNext_unmappedPeptide Test class: jalview.datamodel.AlignedCodonIteratorTest |
0 | jalview.datamodel.AlignedCodonIteratorTest@74d7184a | |
| testNext_withOffset Test class: jalview.datamodel.AlignedCodonIteratorTest |
0 | jalview.datamodel.AlignedCodonIteratorTest@74d7184a | |
| testNoDuplicatesInFetchDbRefs Test class: jalview.ws.SequenceFetcherTest |
0 | jalview.ws.SequenceFetcherTest@6105f8a3 | |
| testNoFeaturesDisplayed Test class: jalview.renderer.seqfeatures.FeatureColourFinderTest |
0 | jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f | |
| testNoSort_autocalcFirst Test class: jalview.analysis.AnnotationSorterTest |
0 | jalview.analysis.AnnotationSorterTest@50b8ae8d | |
| testNonGzipURLIO Test class: jalview.io.FileIOTester |
0 | jalview.io.FileIOTester@e362c57 | |
| testNonGziplocalFileIO Test class: jalview.io.FileIOTester |
0 | jalview.io.FileIOTester@e362c57 | |
| testNumericMatch_nullOrInvalidValue Test class: jalview.util.matcher.MatcherTest |
0 | jalview.util.matcher.MatcherTest@2899a8db | |
| testOffsetByVisibleColumns Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testOneElement Test class: jalview.datamodel.AllColsIteratorTest |
0 | jalview.datamodel.AllColsIteratorTest@5cbf9e9f | |
| testOneElement Test class: jalview.datamodel.AllRowsIteratorTest |
0 | jalview.datamodel.AllRowsIteratorTest@18e8473e | |
| testOpenCommandFile Test class: jalview.ext.rbvi.chimera.ChimeraXCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569 | |
| testOpenCommandFile Test class: jalview.ext.pymol.PymolCommandsTest |
0 | jalview.ext.pymol.PymolCommandsTest@5f577419 | |
| testOpenCommandFile Test class: jalview.ext.rbvi.chimera.ChimeraCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9 | |
| testOpenSession Test class: jalview.ext.rbvi.chimera.ChimeraXCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569 | |
| testOpenSession Test class: jalview.ext.pymol.PymolCommandsTest |
0 | jalview.ext.pymol.PymolCommandsTest@5f577419 | |
| testOpenSession Test class: jalview.ext.rbvi.chimera.ChimeraCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9 | |
| testOpenSession Test class: jalview.ext.jmol.JmolCommandsTest |
0 | jalview.ext.jmol.JmolCommandsTest@3ef41c66 | |
| testOr Test class: jalview.datamodel.features.FeatureMatcherSetTest |
0 | jalview.datamodel.features.FeatureMatcherSetTest@33aa93c | |
| testOutputFeatureFilters Test class: jalview.io.FeaturesFileTest |
0 | jalview.io.FeaturesFileTest@214894fc | |
| testOutputMatrix_html Test class: jalview.analysis.scoremodels.ScoreMatrixTest |
0 | jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7 | |
| testOutputMatrix_roundTrip Test class: jalview.analysis.scoremodels.ScoreMatrixTest |
0 | jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7 | |
| testOverflow Test class: jalview.datamodel.ResidueCountTest |
0 | jalview.datamodel.ResidueCountTest@24b52d3e | |
| testOverflow Test class: jalview.util.SparseCountTest |
0 | jalview.util.SparseCountTest@1af1347d | |
| testPID_includingGaps Test class: jalview.util.ComparisonTest |
0 | jalview.util.ComparisonTest@54f5f647 | |
| testPID_ungappedOnly Test class: jalview.util.ComparisonTest |
0 | jalview.util.ComparisonTest@54f5f647 | |
| testPadGaps Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testPageUpDown Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testPageUpDownWrapped Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testParse Test class: jalview.io.GenBankFileTest |
0 | jalview.io.GenBankFileTest@5aa360ea | |
| testParse Test class: mc_view.PDBfileTest |
0 | mc_view.PDBfileTest@515f4131 | |
| testParse Test class: jalview.io.TCoffeeScoreFileTest |
0 | jalview.io.TCoffeeScoreFileTest@60b85ba1 | |
| testParse Test class: jalview.io.EmblFlatFileTest |
0 | jalview.io.EmblFlatFileTest@5fd9b663 | |
| testParse Test class: jalview.io.FeaturesFileTest |
0 | jalview.io.FeaturesFileTest@214894fc | |
| testParseAppletParameter Test class: jalview.schemes.UserColourSchemeTest |
0 | jalview.schemes.UserColourSchemeTest@31198ceb | |
| testParseAttributeMap Test class: jalview.io.gff.GffHelperBaseTest |
0 | jalview.io.gff.GffHelperBaseTest@1a1d3c1a | |
| testParseColourString Test class: jalview.util.ColorUtilsTest |
0 | jalview.util.ColorUtilsTest@4a8b5227 | |
| testParseFilters Test class: jalview.io.FeaturesFileTest |
0 | jalview.io.FeaturesFileTest@214894fc | |
| testParseHtml_noLinks Test class: jalview.util.ParseHtmlBodyAndLinksTest |
0 | jalview.util.ParseHtmlBodyAndLinksTest@44ea608c | |
| testParseHtml_withLinks Test class: jalview.util.ParseHtmlBodyAndLinksTest |
0 | jalview.util.ParseHtmlBodyAndLinksTest@44ea608c | |
| testParseHtml_withLinksWithEncoding Test class: jalview.util.ParseHtmlBodyAndLinksTest |
0 | jalview.util.ParseHtmlBodyAndLinksTest@44ea608c | |
| testParseHtml_withLinksWithParameters Test class: jalview.util.ParseHtmlBodyAndLinksTest |
0 | jalview.util.ParseHtmlBodyAndLinksTest@44ea608c | |
| testParseIds Test class: jalview.ws.ebi.EBIFetchClientTest |
0 | jalview.ws.ebi.EBIFetchClientTest@5bf61e67 | |
| testParseInt Test class: jalview.util.StringUtilsTest |
0 | jalview.util.StringUtilsTest@632aa1a3 | |
| testParseJalviewFeatureColour Test class: jalview.schemes.FeatureColourTest |
0 | jalview.schemes.FeatureColourTest@7668d560 | |
| testParseLocation Test class: jalview.util.DnaUtilsTest |
0 | jalview.util.DnaUtilsTest@5a6d5a8f | |
| testParseMap Test class: jalview.util.ShiftListTest |
0 | jalview.util.ShiftListTest@30457e14 | |
| testParseMatrix_aaIndexBlosum80 Test class: jalview.io.ScoreMatrixFileTest |
0 | jalview.io.ScoreMatrixFileTest@3d829787 | |
| testParseMatrix_aaindexFormat Test class: jalview.io.ScoreMatrixFileTest |
0 | jalview.io.ScoreMatrixFileTest@3d829787 | |
| testParseMatrix_aaindex_extraDataLines Test class: jalview.io.ScoreMatrixFileTest |
0 | jalview.io.ScoreMatrixFileTest@3d829787 | |
| testParseMatrix_aaindex_mMissing Test class: jalview.io.ScoreMatrixFileTest |
0 | jalview.io.ScoreMatrixFileTest@3d829787 | |
| testParseMatrix_aaindex_rowColMismatch Test class: jalview.io.ScoreMatrixFileTest |
0 | jalview.io.ScoreMatrixFileTest@3d829787 | |
| testParseMatrix_aaindex_tooFewColumns Test class: jalview.io.ScoreMatrixFileTest |
0 | jalview.io.ScoreMatrixFileTest@3d829787 | |
| testParseMatrix_aaindex_tooManyRows Test class: jalview.io.ScoreMatrixFileTest |
0 | jalview.io.ScoreMatrixFileTest@3d829787 | |
| testParseMatrix_headerMissing Test class: jalview.io.ScoreMatrixFileTest |
0 | jalview.io.ScoreMatrixFileTest@3d829787 | |
| testParseMatrix_ncbiBadDelimiter Test class: jalview.io.ScoreMatrixFileTest |
0 | jalview.io.ScoreMatrixFileTest@3d829787 | |
| testParseMatrix_ncbiBadFloat Test class: jalview.io.ScoreMatrixFileTest |
0 | jalview.io.ScoreMatrixFileTest@3d829787 | |
| testParseMatrix_ncbiBadGuideCharacter Test class: jalview.io.ScoreMatrixFileTest |
0 | jalview.io.ScoreMatrixFileTest@3d829787 | |
| testParseMatrix_ncbiFormat Test class: jalview.io.ScoreMatrixFileTest |
0 | jalview.io.ScoreMatrixFileTest@3d829787 | |
| testParseMatrix_ncbiHeaderRepeated Test class: jalview.io.ScoreMatrixFileTest |
0 | jalview.io.ScoreMatrixFileTest@3d829787 | |
| testParseMatrix_ncbiMixedDelimiters Test class: jalview.io.ScoreMatrixFileTest |
0 | jalview.io.ScoreMatrixFileTest@3d829787 | |
| testParseMatrix_ncbiNameMissing Test class: jalview.io.ScoreMatrixFileTest |
0 | jalview.io.ScoreMatrixFileTest@3d829787 | |
| testParseMatrix_ncbiNotEnoughColumns Test class: jalview.io.ScoreMatrixFileTest |
0 | jalview.io.ScoreMatrixFileTest@3d829787 | |
| testParseMatrix_ncbiNotEnoughRows Test class: jalview.io.ScoreMatrixFileTest |
0 | jalview.io.ScoreMatrixFileTest@3d829787 | |
| testParseMatrix_ncbiTooManyColumns Test class: jalview.io.ScoreMatrixFileTest |
0 | jalview.io.ScoreMatrixFileTest@3d829787 | |
| testParseMatrix_ncbiTooManyRows Test class: jalview.io.ScoreMatrixFileTest |
0 | jalview.io.ScoreMatrixFileTest@3d829787 | |
| testParseNameValuePairs Test class: jalview.io.gff.GffHelperBaseTest |
0 | jalview.io.gff.GffHelperBaseTest@1a1d3c1a | |
| testParseToDbRef Test class: jalview.util.DBRefUtilsTest |
0 | jalview.util.DBRefUtilsTest@6979efad | |
| testParseToDbRef_PDB Test class: jalview.util.DBRefUtilsTest |
0 | jalview.util.DBRefUtilsTest@6979efad | |
| testParseToRNA Test class: jalview.io.EmblFlatFileTest |
0 | jalview.io.EmblFlatFileTest@5fd9b663 | |
| testParse_alternativeResidues Test class: jalview.ext.jmol.JmolParserTest |
0 | jalview.ext.jmol.JmolParserTest@6b739528 | |
| testParse_codonStartNot1 Test class: jalview.io.EmblFlatFileTest |
0 | jalview.io.EmblFlatFileTest@5fd9b663 | |
| testParse_jalviewFeaturesOnly Test class: jalview.io.FeaturesFileTest |
0 | jalview.io.FeaturesFileTest@214894fc | |
| testParse_missingResidues Test class: jalview.ext.jmol.JmolParserTest |
0 | jalview.ext.jmol.JmolParserTest@6b739528 | |
| testParse_mixedJalviewGff Test class: jalview.io.FeaturesFileTest |
0 | jalview.io.FeaturesFileTest@214894fc | |
| testParse_ncbiFormat Test class: jalview.io.ScoreMatrixFileTest |
0 | jalview.io.ScoreMatrixFileTest@3d829787 | |
| testParse_noNumbering Test class: jalview.io.ClustalFileTest |
0 | jalview.io.ClustalFileTest@85ec632 | |
| testParse_noUniprotXref Test class: jalview.io.EmblFlatFileTest |
0 | jalview.io.EmblFlatFileTest@5fd9b663 | |
| testParse_pureGff3 Test class: jalview.io.FeaturesFileTest |
0 | jalview.io.FeaturesFileTest@214894fc | |
| testParse_withAnnotations_noSS Test class: mc_view.PDBfileTest |
0 | mc_view.PDBfileTest@515f4131 | |
| testParse_withJmolAddAlignmentAnnotations Test class: mc_view.PDBfileTest |
0 | mc_view.PDBfileTest@515f4131 | |
| testParse_withJmol_noAnnotations Test class: mc_view.PDBfileTest |
0 | mc_view.PDBfileTest@515f4131 | |
| testParse_withNumbering Test class: jalview.io.ClustalFileTest |
0 | jalview.io.ClustalFileTest@85ec632 | |
| testPathEquals Test class: jalview.util.PlatformTest |
0 | jalview.util.PlatformTest@50cf5a23 | |
| testPcaViewAssociation Test class: jalview.project.Jalview2xmlTests |
0 | jalview.project.Jalview2xmlTests@39fc6b2c | |
| testPfamFormatNoLimits Test class: jalview.io.PfamFormatInputTest |
0 | jalview.io.PfamFormatInputTest@5a12c728 | |
| testPfamFormatValidLimits Test class: jalview.io.PfamFormatInputTest |
0 | jalview.io.PfamFormatInputTest@5a12c728 | |
| testPhysicoChemicalProperties Test class: jalview.schemes.ResiduePropertiesTest |
0 | jalview.schemes.ResiduePropertiesTest@1e34c607 | |
| testPositionInBox Test class: jalview.viewmodel.OverviewDimensionsHideHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2 | |
| testPositionInBox Test class: jalview.viewmodel.OverviewDimensionsShowHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620 | |
| testPostMultiply Test class: jalview.math.MatrixTest |
0 | jalview.math.MatrixTest@59221b97 | |
| testPostMultiply Test class: jalview.math.SparseMatrixTest |
0 | jalview.math.SparseMatrixTest@5a772895 | |
| testPreMultiply Test class: jalview.math.MatrixTest |
0 | jalview.math.MatrixTest@59221b97 | |
| testPreMultiply Test class: jalview.math.RotatableMatrixTest |
0 | jalview.math.RotatableMatrixTest@6ac4944a | |
| testPreMultiply Test class: jalview.math.SparseMatrixTest |
0 | jalview.math.SparseMatrixTest@5a772895 | |
| testPreMultiply_sparseProduct Test class: jalview.math.SparseMatrixTest |
0 | jalview.math.SparseMatrixTest@5a772895 | |
| testPreMultiply_tooFewColumns Test class: jalview.math.MatrixTest |
java.lang.IllegalArgumentException: Can't pre-multiply 2 rows by 3 columns at jalview.math.Matrix.preMultiply(Matrix.java:153) at jalview.math.MatrixTest.testPreMultiply_tooFewColumns(MatrixTest.java:110) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.lang.IllegalArgumentException: Can't pre-multiply 2 rows by 3 columns at jalview.math.Matrix.preMultiply(Matrix.java:153) at jalview.math.MatrixTest.testPreMultiply_tooFewColumns(MatrixTest.java:110) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.math.MatrixTest@59221b97 |
| testPreMultiply_tooFewColumns Test class: jalview.math.SparseMatrixTest |
java.lang.IllegalArgumentException: Can't pre-multiply 2 rows by 3 columns at jalview.math.SparseMatrix.preMultiply(SparseMatrix.java:159) at jalview.math.SparseMatrixTest.testPreMultiply_tooFewColumns(SparseMatrixTest.java:136) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.lang.IllegalArgumentException: Can't pre-multiply 2 rows by 3 columns at jalview.math.SparseMatrix.preMultiply(SparseMatrix.java:159) at jalview.math.SparseMatrixTest.testPreMultiply_tooFewColumns(SparseMatrixTest.java:136) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.math.SparseMatrixTest@5a772895 |
| testPreMultiply_tooManyColumns Test class: jalview.math.MatrixTest |
java.lang.IllegalArgumentException: Can't pre-multiply 2 rows by 3 columns at jalview.math.Matrix.preMultiply(Matrix.java:153) at jalview.math.MatrixTest.testPreMultiply_tooManyColumns(MatrixTest.java:94) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.lang.IllegalArgumentException: Can't pre-multiply 2 rows by 3 columns at jalview.math.Matrix.preMultiply(Matrix.java:153) at jalview.math.MatrixTest.testPreMultiply_tooManyColumns(MatrixTest.java:94) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.math.MatrixTest@59221b97 |
| testPreMultiply_tooManyColumns Test class: jalview.math.SparseMatrixTest |
java.lang.IllegalArgumentException: Can't pre-multiply 2 rows by 3 columns at jalview.math.SparseMatrix.preMultiply(SparseMatrix.java:159) at jalview.math.SparseMatrixTest.testPreMultiply_tooManyColumns(SparseMatrixTest.java:118) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.lang.IllegalArgumentException: Can't pre-multiply 2 rows by 3 columns at jalview.math.SparseMatrix.preMultiply(SparseMatrix.java:159) at jalview.math.SparseMatrixTest.testPreMultiply_tooManyColumns(SparseMatrixTest.java:118) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.math.SparseMatrixTest@5a772895 |
| testPreventNegativeStartColumn Test class: jalview.gui.ScalePanelTest |
0 | jalview.gui.ScalePanelTest@420bc288 | |
| testPrint Test class: mc_view.PDBChainTest |
0 | mc_view.PDBChainTest@3c49fab6 | |
| testPrint Test class: jalview.math.RotatableMatrixTest |
0 | jalview.math.RotatableMatrixTest@6ac4944a | |
| testPrintAlignment Test class: jalview.analysis.TestAlignSeq |
0 | jalview.analysis.TestAlignSeq@3704122f | |
| testPrintGffFormat Test class: jalview.io.FeaturesFileTest |
0 | jalview.io.FeaturesFileTest@214894fc | |
| testPrintGffFormat_withFilters Test class: jalview.io.FeaturesFileTest |
0 | jalview.io.FeaturesFileTest@214894fc | |
| testPrintJalviewFormat Test class: jalview.io.FeaturesFileTest |
0 | jalview.io.FeaturesFileTest@214894fc | |
| testPrintJalviewFormat_withFilters Test class: jalview.io.FeaturesFileTest |
0 | jalview.io.FeaturesFileTest@214894fc | |
| testPriorState_multipleInserts Test class: jalview.commands.EditCommandTest |
0 | jalview.commands.EditCommandTest@12f3afb5 | |
| testPriorState_removeAllGaps Test class: jalview.commands.EditCommandTest |
0 | jalview.commands.EditCommandTest@12f3afb5 | |
| testPriorState_removeGappedCols Test class: jalview.commands.EditCommandTest |
0 | jalview.commands.EditCommandTest@12f3afb5 | |
| testPriorState_removeGapsMultipleSeqs Test class: jalview.commands.EditCommandTest |
0 | jalview.commands.EditCommandTest@12f3afb5 | |
| testPriorState_singleDelete Test class: jalview.commands.EditCommandTest |
0 | jalview.commands.EditCommandTest@12f3afb5 | |
| testPriorState_singleInsert Test class: jalview.commands.EditCommandTest |
0 | jalview.commands.EditCommandTest@12f3afb5 | |
| testPriorState_singleInsertWithOffset Test class: jalview.commands.EditCommandTest |
0 | jalview.commands.EditCommandTest@12f3afb5 | |
| testProcessCdnaMatch_forwardToForward Test class: jalview.io.gff.Gff3HelperTest |
0 | jalview.io.gff.Gff3HelperTest@3add81c4 | |
| testProcessCdnaMatch_forwardToReverse Test class: jalview.io.gff.Gff3HelperTest |
0 | jalview.io.gff.Gff3HelperTest@3add81c4 | |
| testProcessCdnaMatch_reverseToForward Test class: jalview.io.gff.Gff3HelperTest |
0 | jalview.io.gff.Gff3HelperTest@3add81c4 | |
| testProcessCdnaMatch_spliced Test class: jalview.io.gff.Gff3HelperTest |
0 | jalview.io.gff.Gff3HelperTest@3add81c4 | |
| testProcessGffSimilarity_protein2dna_forward_querygff Test class: jalview.io.gff.ExonerateHelperTest |
0 | jalview.io.gff.ExonerateHelperTest@d71adc2 | |
| testProcessGffSimilarity_protein2dna_forward_targetgff Test class: jalview.io.gff.ExonerateHelperTest |
0 | jalview.io.gff.ExonerateHelperTest@d71adc2 | |
| testProcessGffSimilarity_protein2dna_reverse_querygff Test class: jalview.io.gff.ExonerateHelperTest |
0 | jalview.io.gff.ExonerateHelperTest@d71adc2 | |
| testProcessGffSimilarity_protein2dna_reverse_targetgff Test class: jalview.io.gff.ExonerateHelperTest |
0 | jalview.io.gff.ExonerateHelperTest@d71adc2 | |
| testProcessProteinMatch Test class: jalview.io.gff.InterProScanHelperTest |
0 | jalview.io.gff.InterProScanHelperTest@57dc9128 | |
| testPropagateInsertions Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testPropagateInsertionsOverlap Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testPut Test class: jalview.ext.android.SparseIntArrayTest |
0 | jalview.ext.android.SparseIntArrayTest@10ad20cb | |
| testPut Test class: jalview.ext.android.SparseShortArrayTest |
0 | jalview.ext.android.SparseShortArrayTest@7dd712e8 | |
| testPut Test class: jalview.datamodel.ResidueCountTest |
0 | jalview.datamodel.ResidueCountTest@24b52d3e | |
| testPut Test class: jalview.util.SparseCountTest |
0 | jalview.util.SparseCountTest@1af1347d | |
| testQuery_plain Test class: jalview.ext.htsjdk.VCFReaderTest |
0 | jalview.ext.htsjdk.VCFReaderTest@13c612bd | |
| testRNAStructureRecovery Test class: jalview.project.Jalview2xmlTests |
0 | jalview.project.Jalview2xmlTests@39fc6b2c | |
| testRangeContains Test class: jalview.util.MappingUtilsTest |
0 | jalview.util.MappingUtilsTest@54e81b21 | |
| testReadBlock Test class: jalview.io.TCoffeeScoreFileTest |
0 | jalview.io.TCoffeeScoreFileTest@60b85ba1 | |
| testReadHeader Test class: jalview.io.TCoffeeScoreFileTest |
0 | jalview.io.TCoffeeScoreFileTest@60b85ba1 | |
| testReadVcf_plain Test class: jalview.ext.htsjdk.VCFReaderTest |
0 | jalview.ext.htsjdk.VCFReaderTest@13c612bd | |
| testRealiseWith Test class: jalview.datamodel.AlignedCodonFrameTest |
0 | jalview.datamodel.AlignedCodonFrameTest@7bd69e82 | |
| testRecordConservation Test class: jalview.analysis.ConservationTest |
0 | jalview.analysis.ConservationTest@51c929ae | |
| testRegionsToString Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testRegister Test class: jalview.gui.PaintRefresherTest |
0 | jalview.gui.PaintRefresherTest@2e6ee0bc | |
| testRegisterColourScheme Test class: jalview.schemes.ColourSchemesTest |
0 | jalview.schemes.ColourSchemesTest@3fcdcf | |
| testRegisterFileFormat Test class: jalview.io.FileFormatsTest |
0 | jalview.io.FileFormatsTest@10567255 | |
| testRegisterMapping Test class: jalview.structure.StructureSelectionManagerTest |
0 | jalview.structure.StructureSelectionManagerTest@5dda14d0 | |
| testRegisterMappings Test class: jalview.structure.StructureSelectionManagerTest |
0 | jalview.structure.StructureSelectionManagerTest@5dda14d0 | |
| testRemove Test class: jalview.datamodel.RangeElementsIteratorTest |
java.lang.UnsupportedOperationException at jalview.datamodel.RangeElementsIterator.remove(RangeElementsIterator.java:106) at jalview.datamodel.RangeElementsIteratorTest.testRemove(RangeElementsIteratorTest.java:206) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.lang.UnsupportedOperationException at jalview.datamodel.RangeElementsIterator.remove(RangeElementsIterator.java:106) at jalview.datamodel.RangeElementsIteratorTest.testRemove(RangeElementsIteratorTest.java:206) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.datamodel.RangeElementsIteratorTest@3301500b |
| testRemove Test class: jalview.datamodel.VisibleRowsIteratorTest |
java.lang.UnsupportedOperationException at jalview.datamodel.VisibleRowsIterator.remove(VisibleRowsIterator.java:97) at jalview.datamodel.VisibleRowsIteratorTest.testRemove(VisibleRowsIteratorTest.java:222) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.lang.UnsupportedOperationException at jalview.datamodel.VisibleRowsIterator.remove(VisibleRowsIterator.java:97) at jalview.datamodel.VisibleRowsIteratorTest.testRemove(VisibleRowsIteratorTest.java:222) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.datamodel.VisibleRowsIteratorTest@27a0a5a2 |
| testRemove Test class: jalview.datamodel.AllColsIteratorTest |
java.lang.UnsupportedOperationException at jalview.datamodel.AllColsIterator.remove(AllColsIterator.java:71) at jalview.datamodel.AllColsIteratorTest.testRemove(AllColsIteratorTest.java:86) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.lang.UnsupportedOperationException at jalview.datamodel.AllColsIterator.remove(AllColsIterator.java:71) at jalview.datamodel.AllColsIteratorTest.testRemove(AllColsIteratorTest.java:86) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.datamodel.AllColsIteratorTest@5cbf9e9f |
| testRemove Test class: jalview.datamodel.AllRowsIteratorTest |
java.lang.UnsupportedOperationException at jalview.datamodel.AllRowsIterator.remove(AllRowsIterator.java:73) at jalview.datamodel.AllRowsIteratorTest.testRemove(AllRowsIteratorTest.java:97) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.lang.UnsupportedOperationException at jalview.datamodel.AllRowsIterator.remove(AllRowsIterator.java:73) at jalview.datamodel.AllRowsIteratorTest.testRemove(AllRowsIteratorTest.java:97) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.datamodel.AllRowsIteratorTest@18e8473e |
| testRemoveComponent Test class: jalview.gui.PaintRefresherTest |
0 | jalview.gui.PaintRefresherTest@2e6ee0bc | |
| testRemoveElement Test class: jalview.datamodel.ColumnSelectionTest |
0 | jalview.datamodel.ColumnSelectionTest@3ad394e6 | |
| testRemoveEndPositions Test class: jalview.util.MappingUtilsTest |
0 | jalview.util.MappingUtilsTest@54e81b21 | |
| testRemoveQuotes Test class: jalview.io.EmblFlatFileTest |
0 | jalview.io.EmblFlatFileTest@5fd9b663 | |
| testRemoveStartPositions Test class: jalview.util.MappingUtilsTest |
0 | jalview.util.MappingUtilsTest@54e81b21 | |
| testRemoveStartPositions_reverseStrand Test class: jalview.util.MappingUtilsTest |
0 | jalview.util.MappingUtilsTest@54e81b21 | |
| testRemoveWorkerForAnnotation Test class: jalview.workers.AlignCalcManagerTest |
0 | jalview.workers.AlignCalcManagerTest@4c432866 | |
| testRepeat Test class: jalview.util.FormatTest |
0 | jalview.util.FormatTest@4a67318f | |
| testReplace Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testReplace Test class: jalview.commands.EditCommandTest |
0 | jalview.commands.EditCommandTest@12f3afb5 | |
| testReplaceFirstResiduesWithGaps Test class: jalview.commands.EditCommandTest |
0 | jalview.commands.EditCommandTest@12f3afb5 | |
| testReplaceOddGaps Test class: jalview.gui.AppVarnaTest |
0 | jalview.gui.AppVarnaTest@61e3a1fd | |
| testReplace_withGaps Test class: jalview.commands.EditCommandTest |
0 | jalview.commands.EditCommandTest@12f3afb5 | |
| testReset Test class: jalview.gui.AnnotationColumnChooserTest |
0 | jalview.gui.AnnotationColumnChooserTest@7e8e8651 | |
| testResetOriginalState Test class: jalview.gui.AnnotationChooserTest |
0 | jalview.gui.AnnotationChooserTest@63a5e46c | |
| testResolveExonerateGff Test class: jalview.io.gff.GffTests |
0 | jalview.io.gff.GffTests@159e366 | |
| testRetainFeature Test class: jalview.ext.ensembl.EnsemblCdnaTest |
0 | jalview.ext.ensembl.EnsemblCdnaTest@2c282004 | |
| testRetainFeature Test class: jalview.ext.ensembl.EnsemblCdsTest |
0 | jalview.ext.ensembl.EnsemblCdsTest@22ee2d0 | |
| testRetainFeature Test class: jalview.ext.ensembl.EnsemblGeneTest |
0 | jalview.ext.ensembl.EnsemblGeneTest@7bfc3126 | |
| testRetainFeature Test class: jalview.ext.ensembl.EnsemblGenomeTest |
0 | jalview.ext.ensembl.EnsemblGenomeTest@3e792ce3 | |
| testRevealAllHiddenColumns Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testRevealHiddenColumns Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testReverseCdna Test class: jalview.analysis.DnaTest |
0 | jalview.analysis.DnaTest@29d2d081 | |
| testReverseComplementAllele Test class: jalview.ext.ensembl.EnsemblSeqProxyTest |
0 | jalview.ext.ensembl.EnsemblSeqProxyTest@3c1e3314 | |
| testReverseComplementAlleles Test class: jalview.ext.ensembl.EnsemblSeqProxyTest |
0 | jalview.ext.ensembl.EnsemblSeqProxyTest@3c1e3314 | |
| testReverseIntArray Test class: jalview.util.ArrayUtilsTest |
0 | jalview.util.ArrayUtilsTest@25230246 | |
| testReverseRange_maxToZero Test class: jalview.math.MatrixTest |
0 | jalview.math.MatrixTest@59221b97 | |
| testReverseRange_swapMinMax Test class: jalview.math.MatrixTest |
0 | jalview.math.MatrixTest@59221b97 | |
| testReverseSequence Test class: jalview.analysis.DnaTest |
0 | jalview.analysis.DnaTest@29d2d081 | |
| testRnamlToStockholmIO Test class: jalview.io.RNAMLfileTest |
0 | jalview.io.RNAMLfileTest@6e5bfdfc | |
| testRoundTrip Test class: jalview.io.FormatAdapterTest Parameters: Fasta |
0 | jalview.io.FormatAdapterTest@79c4715d | |
| testRoundTrip Test class: jalview.io.FormatAdapterTest Parameters: Pfam |
0 | jalview.io.FormatAdapterTest@79c4715d | |
| testRoundTrip Test class: jalview.io.FormatAdapterTest Parameters: Stockholm |
0 | jalview.io.FormatAdapterTest@79c4715d | |
| testRoundTrip Test class: jalview.io.FormatAdapterTest Parameters: PIR |
0 | jalview.io.FormatAdapterTest@79c4715d | |
| testRoundTrip Test class: jalview.io.FormatAdapterTest Parameters: BLC |
0 | jalview.io.FormatAdapterTest@79c4715d | |
| testRoundTrip Test class: jalview.io.FormatAdapterTest Parameters: AMSA |
0 | jalview.io.FormatAdapterTest@79c4715d | |
| testRoundTrip Test class: jalview.io.FormatAdapterTest Parameters: Json |
0 | jalview.io.FormatAdapterTest@79c4715d | |
| testRoundTrip Test class: jalview.io.FormatAdapterTest Parameters: Pileup |
0 | jalview.io.FormatAdapterTest@79c4715d | |
| testRoundTrip Test class: jalview.io.FormatAdapterTest Parameters: MSF |
0 | jalview.io.FormatAdapterTest@79c4715d | |
| testRoundTrip Test class: jalview.io.FormatAdapterTest Parameters: Clustal |
0 | jalview.io.FormatAdapterTest@79c4715d | |
| testRoundTrip Test class: jalview.io.FormatAdapterTest Parameters: Phylip |
0 | jalview.io.FormatAdapterTest@79c4715d | |
| testRowDelete Test class: jalview.urls.UrlLinkTableModelTest |
0 | jalview.urls.UrlLinkTableModelTest@5bbbdd4b | |
| testRowEditable Test class: jalview.urls.UrlLinkTableModelTest |
0 | jalview.urls.UrlLinkTableModelTest@5bbbdd4b | |
| testRowInsert Test class: jalview.urls.UrlLinkTableModelTest |
0 | jalview.urls.UrlLinkTableModelTest@5bbbdd4b | |
| testSameSequence Test class: jalview.analysis.CrossRefTest |
0 | jalview.analysis.CrossRefTest@3c8bdd5b | |
| testSaveLoad Test class: jalview.gui.FeatureSettingsTest |
0 | jalview.gui.FeatureSettingsTest@4d4d48a6 | |
| testSaveLoadFeatureColoursAndFilters Test class: jalview.project.Jalview2xmlTests |
0 | jalview.project.Jalview2xmlTests@39fc6b2c | |
| testSaveSession Test class: jalview.ext.rbvi.chimera.ChimeraXCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569 | |
| testSaveSession Test class: jalview.ext.pymol.PymolCommandsTest |
0 | jalview.ext.pymol.PymolCommandsTest@5f577419 | |
| testSaveSession Test class: jalview.ext.rbvi.chimera.ChimeraCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9 | |
| testSaveSession Test class: jalview.ext.jmol.JmolCommandsTest |
0 | jalview.ext.jmol.JmolCommandsTest@3ef41c66 | |
| testScrollRight Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testScrollRightWithHidden Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testScrollToVisible Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testScrollToWrappedVisible Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testScrollUp Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testScrollUpWithHidden Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testScrollUp_wrapped Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testSearchDataset Test class: jalview.analysis.CrossRefTest |
0 | jalview.analysis.CrossRefTest@3c8bdd5b | |
| testSearchRefs_accessionid Test class: jalview.util.DBRefUtilsTest |
0 | jalview.util.DBRefUtilsTest@6979efad | |
| testSearchRefs_noMapping Test class: jalview.util.DBRefUtilsTest |
0 | jalview.util.DBRefUtilsTest@6979efad | |
| testSearchRefs_wildcardAccessionid Test class: jalview.util.DBRefUtilsTest |
0 | jalview.util.DBRefUtilsTest@6979efad | |
| testSearchRefs_withMapping Test class: jalview.util.DBRefUtilsTest |
0 | jalview.util.DBRefUtilsTest@6979efad | |
| testSelectColumnsWithHighlight Test class: jalview.controller.AlignViewControllerTest |
0 | jalview.controller.AlignViewControllerTest@2c22a348 | |
| testSelectColumns_withHidden Test class: jalview.gui.ScalePanelTest |
0 | jalview.gui.ScalePanelTest@420bc288 | |
| testSelectRefs Test class: jalview.util.DBRefUtilsTest |
0 | jalview.util.DBRefUtilsTest@6979efad | |
| testSelectType_hideForAll Test class: jalview.gui.AnnotationChooserTest |
0 | jalview.gui.AnnotationChooserTest@63a5e46c | |
| testSelectType_hideForSelected Test class: jalview.gui.AnnotationChooserTest |
0 | jalview.gui.AnnotationChooserTest@63a5e46c | |
| testSelectType_showForAll Test class: jalview.gui.AnnotationChooserTest |
0 | jalview.gui.AnnotationChooserTest@63a5e46c | |
| testSelectType_showForSelected Test class: jalview.gui.AnnotationChooserTest |
0 | jalview.gui.AnnotationChooserTest@63a5e46c | |
| testSeparatorListToArray Test class: jalview.bin.JalviewLiteTest |
0 | jalview.bin.JalviewLiteTest@24855019 | |
| testSeparatorListToArray Test class: jalview.util.StringUtilsTest |
0 | jalview.util.StringUtilsTest@632aa1a3 | |
| testSeqFeatureAddition Test class: jalview.analysis.SeqsetUtilsTest |
0 | jalview.analysis.SeqsetUtilsTest@2fa7ae9 | |
| testSeqParsed Test class: jalview.io.JSONFileTest |
0 | jalview.io.JSONFileTest@54336c81 | |
| testSequentialDataExtraction Test class: jalview.io.PhylipFileTests |
0 | jalview.io.PhylipFileTests@79ab3a71 | |
| testSequentialIO Test class: jalview.io.PhylipFileTests |
0 | jalview.io.PhylipFileTests@79ab3a71 | |
| testSetAttribute Test class: jalview.ext.rbvi.chimera.ChimeraXCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569 | |
| testSetAttribute Test class: jalview.ext.pymol.PymolCommandsTest |
0 | jalview.ext.pymol.PymolCommandsTest@5f577419 | |
| testSetAttribute Test class: jalview.ext.rbvi.chimera.ChimeraCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9 | |
| testSetAttributes Test class: jalview.ext.rbvi.chimera.ChimeraXCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569 | |
| testSetAttributes Test class: jalview.ext.pymol.PymolCommandsTest |
0 | jalview.ext.pymol.PymolCommandsTest@5f577419 | |
| testSetAttributes Test class: jalview.ext.rbvi.chimera.ChimeraCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9 | |
| testSetBackgroundColour Test class: jalview.ext.rbvi.chimera.ChimeraXCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569 | |
| testSetBackgroundColour Test class: jalview.ext.pymol.PymolCommandsTest |
0 | jalview.ext.pymol.PymolCommandsTest@5f577419 | |
| testSetBackgroundColour Test class: jalview.ext.rbvi.chimera.ChimeraCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9 | |
| testSetBackgroundColour Test class: jalview.ext.jmol.JmolCommandsTest |
0 | jalview.ext.jmol.JmolCommandsTest@3ef41c66 | |
| testSetBoxFromMouseClick Test class: jalview.viewmodel.OverviewDimensionsHideHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2 | |
| testSetBoxFromMouseClick Test class: jalview.viewmodel.OverviewDimensionsShowHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620 | |
| testSetBoxFromViewport Test class: jalview.viewmodel.OverviewDimensionsHideHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2 | |
| testSetBoxFromViewport Test class: jalview.viewmodel.OverviewDimensionsShowHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620 | |
| testSetBoxFromViewportHiddenColsAtEnd Test class: jalview.viewmodel.OverviewDimensionsHideHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2 | |
| testSetBoxFromViewportHiddenColsAtEnd Test class: jalview.viewmodel.OverviewDimensionsShowHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620 | |
| testSetBoxFromViewportHiddenColsAtStart Test class: jalview.viewmodel.OverviewDimensionsHideHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2 | |
| testSetBoxFromViewportHiddenColsAtStart Test class: jalview.viewmodel.OverviewDimensionsShowHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620 | |
| testSetBoxFromViewportHiddenColsInMiddle Test class: jalview.viewmodel.OverviewDimensionsHideHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2 | |
| testSetBoxFromViewportHiddenColsInMiddle Test class: jalview.viewmodel.OverviewDimensionsShowHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620 | |
| testSetBoxFromViewportHiddenRowsAtEnd Test class: jalview.viewmodel.OverviewDimensionsHideHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2 | |
| testSetBoxFromViewportHiddenRowsAtEnd Test class: jalview.viewmodel.OverviewDimensionsShowHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620 | |
| testSetBoxFromViewportHiddenRowsAtStart Test class: jalview.viewmodel.OverviewDimensionsHideHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2 | |
| testSetBoxFromViewportHiddenRowsAtStart Test class: jalview.viewmodel.OverviewDimensionsShowHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620 | |
| testSetBoxFromViewportHiddenRowsInMiddle Test class: jalview.viewmodel.OverviewDimensionsHideHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2 | |
| testSetBoxFromViewportHiddenRowsInMiddle Test class: jalview.viewmodel.OverviewDimensionsShowHiddenTest |
0 | jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620 | |
| testSetChainCode Test class: jalview.datamodel.PDBEntryTest |
0 | jalview.datamodel.PDBEntryTest@7561db12 | |
| testSetChainColours_colour Test class: mc_view.PDBChainTest |
0 | mc_view.PDBChainTest@3c49fab6 | |
| testSetChainColours_colourScheme Test class: mc_view.PDBChainTest |
0 | mc_view.PDBChainTest@3c49fab6 | |
| testSetChargeColours Test class: mc_view.PDBChainTest |
0 | mc_view.PDBChainTest@3c49fab6 | |
| testSetContext Test class: jalview.datamodel.SequenceGroupTest |
0 | jalview.datamodel.SequenceGroupTest@3a45c42a | |
| testSetDatasetSequence_cascading Test class: jalview.datamodel.SequenceTest |
java.lang.IllegalArgumentException: Implementation error: cascading dataset sequences are not allowed. at jalview.datamodel.Sequence.setDatasetSequence(Sequence.java:1468) at jalview.datamodel.SequenceTest.testSetDatasetSequence_cascading(SequenceTest.java:1528) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.lang.IllegalArgumentException: Implementation error: cascading dataset sequences are not allowed. at jalview.datamodel.Sequence.setDatasetSequence(Sequence.java:1468) at jalview.datamodel.SequenceTest.testSetDatasetSequence_cascading(SequenceTest.java:1528) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.datamodel.SequenceTest@36dce7ed |
| testSetDatasetSequence_toSelf Test class: jalview.datamodel.SequenceTest |
java.lang.IllegalArgumentException: Implementation Error: self reference passed to SequenceI.setDatasetSequence at jalview.datamodel.Sequence.setDatasetSequence(Sequence.java:1463) at jalview.datamodel.SequenceTest.testSetDatasetSequence_toSelf(SequenceTest.java:1516) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.lang.IllegalArgumentException: Implementation Error: self reference passed to SequenceI.setDatasetSequence at jalview.datamodel.Sequence.setDatasetSequence(Sequence.java:1463) at jalview.datamodel.SequenceTest.testSetDatasetSequence_toSelf(SequenceTest.java:1516) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.datamodel.SequenceTest@36dce7ed |
| testSetDataset_selfReference Test class: jalview.datamodel.AlignmentTest |
java.lang.IllegalArgumentException: Circular dataset reference at jalview.datamodel.Alignment.setDataset(Alignment.java:1036) at jalview.datamodel.AlignmentTest.testSetDataset_selfReference(AlignmentTest.java:1331) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.lang.IllegalArgumentException: Circular dataset reference at jalview.datamodel.Alignment.setDataset(Alignment.java:1036) at jalview.datamodel.AlignmentTest.testSetDataset_selfReference(AlignmentTest.java:1331) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.datamodel.AlignmentTest@27dc79f7 |
| testSetDateProperty Test class: jalview.bin.CacheTest |
0 | jalview.bin.CacheTest@ea27e34 | |
| testSetDefaultUrl Test class: jalview.urls.UrlProviderTest |
0 | jalview.urls.UrlProviderTest@438bad7c | |
| testSetDefaultUrlWrongly Test class: jalview.urls.UrlProviderTest |
java.lang.IllegalArgumentException at jalview.urls.UrlProvider.setPrimaryUrl(UrlProvider.java:105) at jalview.urls.UrlProviderTest.testSetDefaultUrlWrongly(UrlProviderTest.java:140) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) ... Removed 25 stack frames java.lang.IllegalArgumentException at jalview.urls.UrlProvider.setPrimaryUrl(UrlProvider.java:105) at jalview.urls.UrlProviderTest.testSetDefaultUrlWrongly(UrlProviderTest.java:140) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
0 | jalview.urls.UrlProviderTest@438bad7c |
| testSetElementsFrom Test class: jalview.datamodel.ColumnSelectionTest |
0 | jalview.datamodel.ColumnSelectionTest@3ad394e6 | |
| testSetEndSeq Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testSetGetHasSearchResults Test class: jalview.gui.AlignViewportTest |
0 | jalview.gui.AlignViewportTest@437e951d | |
| testSetGlobalColourScheme Test class: jalview.gui.AlignViewportTest |
0 | jalview.gui.AlignViewportTest@437e951d | |
| testSetHiddenColumns Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testSetMapping_seqFeatures Test class: jalview.structure.StructureSelectionManagerTest |
0 | jalview.structure.StructureSelectionManagerTest@5dda14d0 | |
| testSetName Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testSetProgressBar Test class: jalview.gui.ProgressBarTest |
0 | jalview.gui.ProgressBarTest@1bb9aa43 | |
| testSetScrollValues Test class: jalview.gui.AlignmentPanelTest |
0 | jalview.gui.AlignmentPanelTest@77b325b3 | |
| testSetSecondaryStructure Test class: jalview.ext.jmol.JmolParserTest |
0 | jalview.ext.jmol.JmolParserTest@6b739528 | |
| testSetSelectionGroup Test class: jalview.gui.AlignViewportTest |
0 | jalview.gui.AlignViewportTest@437e951d | |
| testSetStartEndRes Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testSetStartEndResWrapped Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testSetStartEndSeq Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testSetStartRes Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testSetStartResAndSeq Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testSetStartSeq Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testSetStatusReturnsNearestResiduePosition Test class: jalview.gui.SeqPanelTest |
0 | jalview.gui.SeqPanelTest@308a6984 | |
| testSetViewportHeight Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testSetViewportLocation Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testSetViewportStartAndHeight Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testSetViewportStartAndWidth Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testSetViewportStartAndWidthWrapped Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testSetViewportWidth Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testShadeCalculation_aboveThreshold Test class: jalview.schemes.AnnotationColourGradientTest |
0 | jalview.schemes.AnnotationColourGradientTest@3b718392 | |
| testShadeCalculation_belowThreshold Test class: jalview.schemes.AnnotationColourGradientTest |
0 | jalview.schemes.AnnotationColourGradientTest@3b718392 | |
| testShadeCalculation_noThreshold Test class: jalview.schemes.AnnotationColourGradientTest |
0 | jalview.schemes.AnnotationColourGradientTest@3b718392 | |
| testShiftFeatures Test class: jalview.datamodel.features.FeatureStoreTest |
0 | jalview.datamodel.features.FeatureStoreTest@106faf11 | |
| testShiftFeatures Test class: jalview.datamodel.features.SequenceFeaturesTest |
0 | jalview.datamodel.features.SequenceFeaturesTest@70f43b45 | |
| testShmmrService Test class: jalview.ws.rest.ShmmrRSBSService |
0 | jalview.ws.rest.ShmmrRSBSService@15051a0 | |
| testShmmrServiceDataprep Test class: jalview.ws.rest.ShmmrRSBSService |
0 | jalview.ws.rest.ShmmrRSBSService@15051a0 | |
| testShowBackbone Test class: jalview.ext.rbvi.chimera.ChimeraXCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569 | |
| testShowBackbone Test class: jalview.ext.pymol.PymolCommandsTest |
0 | jalview.ext.pymol.PymolCommandsTest@5f577419 | |
| testShowBackbone Test class: jalview.ext.rbvi.chimera.ChimeraCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9 | |
| testShowBackbone Test class: jalview.ext.jmol.JmolCommandsTest |
0 | jalview.ext.jmol.JmolCommandsTest@3ef41c66 | |
| testShowOrDontShowOccupancy Test class: jalview.gui.AlignViewportTest |
0 | jalview.gui.AlignViewportTest@437e951d | |
| testShowOrHideSequenceAnnotations Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testSimpleVisibleRegions Test class: jalview.datamodel.VisibleContigsIteratorTest |
0 | jalview.datamodel.VisibleContigsIteratorTest@33d05366 | |
| testSingleSeqViewJMol Test class: jalview.ext.jmol.JmolViewerTest |
0 | jalview.ext.jmol.JmolViewerTest@622ef26a | |
| testSomething Test class: jalview.datamodel.SeqCigarTest |
0 | jalview.datamodel.SeqCigarTest@6e9c413e | |
| testSortByFeature_density Test class: jalview.analysis.AlignmentSorterTest |
0 | jalview.analysis.AlignmentSorterTest@3228d990 | |
| testSortByFeature_score Test class: jalview.analysis.AlignmentSorterTest |
0 | jalview.analysis.AlignmentSorterTest@3228d990 | |
| testSortByInt Test class: jalview.util.QuickSortTest |
0 | jalview.util.QuickSortTest@450794b4 | |
| testSortBySequenceAndType_autocalcFirst Test class: jalview.analysis.AnnotationSorterTest |
0 | jalview.analysis.AnnotationSorterTest@50b8ae8d | |
| testSortBySequenceAndType_autocalcLast Test class: jalview.analysis.AnnotationSorterTest |
0 | jalview.analysis.AnnotationSorterTest@50b8ae8d | |
| testSortByString Test class: jalview.util.QuickSortTest |
0 | jalview.util.QuickSortTest@450794b4 | |
| testSortByTypeAndSequence_autocalcFirst Test class: jalview.analysis.AnnotationSorterTest |
0 | jalview.analysis.AnnotationSorterTest@50b8ae8d | |
| testSortByTypeAndSequence_autocalcLast Test class: jalview.analysis.AnnotationSorterTest |
0 | jalview.analysis.AnnotationSorterTest@50b8ae8d | |
| testSortFeatures Test class: jalview.datamodel.features.SequenceFeaturesTest |
0 | jalview.datamodel.features.SequenceFeaturesTest@70f43b45 | |
| testSort_byDoubleValues Test class: jalview.util.QuickSortTest |
0 | jalview.util.QuickSortTest@450794b4 | |
| testSort_byFloatValues Test class: jalview.util.QuickSortTest |
0 | jalview.util.QuickSortTest@450794b4 | |
| testSort_byIntValues Test class: jalview.util.QuickSortTest |
0 | jalview.util.QuickSortTest@450794b4 | |
| testSort_byStringValues Test class: jalview.util.QuickSortTest |
0 | jalview.util.QuickSortTest@450794b4 | |
| testSort_charSortByFloat_mostlyZeroValues Test class: jalview.util.QuickSortTest |
0 | jalview.util.QuickSortTest@450794b4 | |
| testSort_charSortByInt_mostlyZeroValues Test class: jalview.util.QuickSortTest |
0 | jalview.util.QuickSortTest@450794b4 | |
| testSort_timingPresorted Test class: jalview.analysis.AnnotationSorterTest |
0 | jalview.analysis.AnnotationSorterTest@50b8ae8d | |
| testSort_timingSemisorted Test class: jalview.analysis.AnnotationSorterTest |
0 | jalview.analysis.AnnotationSorterTest@50b8ae8d | |
| testSort_timingUnsorted Test class: jalview.analysis.AnnotationSorterTest |
0 | jalview.analysis.AnnotationSorterTest@50b8ae8d | |
| testStandardProtDbs Test class: jalview.ws.seqfetcher.DbRefFetcherTest |
0 | jalview.ws.seqfetcher.DbRefFetcherTest@1162410a | |
| testStarsInFasta1 Test class: jalview.io.FileIOTester |
0 | jalview.io.FileIOTester@e362c57 | |
| testStarsInFasta2 Test class: jalview.io.FileIOTester |
0 | jalview.io.FileIOTester@e362c57 | |
| testStartNotifications Test class: jalview.ext.rbvi.chimera.ChimeraXCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569 | |
| testStartNotifications Test class: jalview.ext.rbvi.chimera.ChimeraCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9 | |
| testStopNotifications Test class: jalview.ext.rbvi.chimera.ChimeraXCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569 | |
| testStopNotifications Test class: jalview.ext.rbvi.chimera.ChimeraCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9 | |
| testStoreAndRecoverColourThresholds Test class: jalview.project.Jalview2xmlTests |
0 | jalview.project.Jalview2xmlTests@39fc6b2c | |
| testStoreAndRecoverExpandedviews Test class: jalview.project.Jalview2xmlTests |
5 | jalview.project.Jalview2xmlTests@39fc6b2c | |
| testStoreAndRecoverGeneLocus Test class: jalview.project.Jalview2xmlTests |
0 | jalview.project.Jalview2xmlTests@39fc6b2c | |
| testStoreAndRecoverGroupRepSeqs Test class: jalview.project.Jalview2xmlTests |
0 | jalview.project.Jalview2xmlTests@39fc6b2c | |
| testStoreAndRecoverPDBEntry Test class: jalview.project.Jalview2xmlTests |
0 | jalview.project.Jalview2xmlTests@39fc6b2c | |
| testStoreAndRecoverReferenceSeqSettings Test class: jalview.project.Jalview2xmlTests |
5 | jalview.project.Jalview2xmlTests@39fc6b2c | |
| testStretchGroup_expand Test class: jalview.datamodel.ColumnSelectionTest |
0 | jalview.datamodel.ColumnSelectionTest@3ad394e6 | |
| testStretchGroup_shrink Test class: jalview.datamodel.ColumnSelectionTest |
0 | jalview.datamodel.ColumnSelectionTest@3ad394e6 | |
| testStringConstructor Test class: mc_view.AtomTest |
0 | mc_view.AtomTest@62e8f862 | |
| testStringConstructor_blankOccupancyTempFactor Test class: mc_view.AtomTest |
0 | mc_view.AtomTest@62e8f862 | |
| testStringConstructor_malformed Test class: mc_view.AtomTest |
0 | mc_view.AtomTest@62e8f862 | |
| testStripHtmlTags Test class: jalview.util.StringUtilsTest |
0 | jalview.util.StringUtilsTest@632aa1a3 | |
| testSuperposeStructures Test class: jalview.ext.rbvi.chimera.ChimeraXCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569 | |
| testSuperposeStructures Test class: jalview.ext.pymol.PymolCommandsTest |
0 | jalview.ext.pymol.PymolCommandsTest@5f577419 | |
| testSuperposeStructures Test class: jalview.ext.rbvi.chimera.ChimeraCommandsTest |
0 | jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9 | |
| testSuperposeStructures Test class: jalview.ext.jmol.JmolCommandsTest |
0 | jalview.ext.jmol.JmolCommandsTest@3ef41c66 | |
| testSymmetric Test class: jalview.analysis.scoremodels.ScoreMatrixTest |
0 | jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7 | |
| testTCoffeeScores Test class: jalview.project.Jalview2xmlTests |
0 | jalview.project.Jalview2xmlTests@39fc6b2c | |
| testToAppletParameter Test class: jalview.schemes.UserColourSchemeTest |
0 | jalview.schemes.UserColourSchemeTest@31198ceb | |
| testToJalviewFormat Test class: jalview.schemes.FeatureColourTest |
0 | jalview.schemes.FeatureColourTest@7668d560 | |
| testToSentenceCase Test class: jalview.util.StringUtilsTest |
0 | jalview.util.StringUtilsTest@632aa1a3 | |
| testToStableString Test class: jalview.datamodel.features.FeatureMatcherSetTest |
0 | jalview.datamodel.features.FeatureMatcherSetTest@33aa93c | |
| testToStableString Test class: jalview.datamodel.features.FeatureMatcherTest |
0 | jalview.datamodel.features.FeatureMatcherTest@32c0915e | |
| testToString Test class: jalview.datamodel.MappingTest |
0 | jalview.datamodel.MappingTest@323e8306 | |
| testToString Test class: jalview.datamodel.MatchTest |
0 | jalview.datamodel.MatchTest@4acf72b6 | |
| testToString Test class: jalview.datamodel.ResidueCountTest |
0 | jalview.datamodel.ResidueCountTest@24b52d3e | |
| testToString Test class: jalview.datamodel.SearchResultsTest |
0 | jalview.datamodel.SearchResultsTest@15deb1dc | |
| testToString Test class: jalview.schemes.JalviewColourSchemeTest |
0 | jalview.schemes.JalviewColourSchemeTest@6c44052e | |
| testToString Test class: jalview.datamodel.features.FeatureMatcherSetTest |
0 | jalview.datamodel.features.FeatureMatcherSetTest@33aa93c | |
| testToString Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testToString Test class: jalview.datamodel.features.FeatureMatcherTest |
0 | jalview.datamodel.features.FeatureMatcherTest@32c0915e | |
| testToString Test class: jalview.util.matcher.ConditionTest |
0 | jalview.util.matcher.ConditionTest@3b582111 | |
| testToString Test class: jalview.datamodel.AlignedCodonTest |
0 | jalview.datamodel.AlignedCodonTest@51b01960 | |
| testToString Test class: jalview.util.matcher.MatcherTest |
0 | jalview.util.matcher.MatcherTest@2899a8db | |
| testToTkCode Test class: jalview.util.ColorUtilsTest |
0 | jalview.util.ColorUtilsTest@4a8b5227 | |
| testTqli_matchesMatrix Test class: jalview.math.SparseMatrixTest |
0 | jalview.math.SparseMatrixTest@5a772895 | |
| testTransferAnnotation Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testTransferFeatures Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testTransferFeatures_withOmit Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testTransferFeatures_withSelect Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testTransferGeneLoci Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testTranslate Test class: mc_view.BondTest |
0 | mc_view.BondTest@26f3d90c | |
| testTranslate Test class: jalview.analysis.GeneticCodesTest |
0 | jalview.analysis.GeneticCodesTest@751e664e | |
| testTranslateCanonical Test class: jalview.analysis.GeneticCodesTest |
0 | jalview.analysis.GeneticCodesTest@751e664e | |
| testTranslateCdna_hiddenColumns Test class: jalview.analysis.DnaTest |
0 | jalview.analysis.DnaTest@29d2d081 | |
| testTranslateCdna_sequenceOrderIndependent Test class: jalview.analysis.DnaTest |
0 | jalview.analysis.DnaTest@29d2d081 | |
| testTranslateCdna_simple Test class: jalview.analysis.DnaTest |
0 | jalview.analysis.DnaTest@29d2d081 | |
| testTranslateCdna_withUntranslatableCodons Test class: jalview.analysis.DnaTest |
0 | jalview.analysis.DnaTest@29d2d081 | |
| testTranslateCdna_withUntranslatableCodonsAndHiddenColumns Test class: jalview.analysis.DnaTest |
0 | jalview.analysis.DnaTest@29d2d081 | |
| testTranslate_nonStandardTableAmbiguityCodes Test class: jalview.analysis.GeneticCodesTest |
0 | jalview.analysis.GeneticCodesTest@751e664e | |
| testTranslate_standardTable Test class: jalview.analysis.GeneticCodesTest |
0 | jalview.analysis.GeneticCodesTest@751e664e | |
| testTranslate_standardTableAmbiguityCodes Test class: jalview.analysis.GeneticCodesTest |
0 | jalview.analysis.GeneticCodesTest@751e664e | |
| testTranslatesAs Test class: jalview.analysis.AlignmentUtilsTests |
0 | jalview.analysis.AlignmentUtilsTests@54e7391d | |
| testTranspose Test class: jalview.math.SparseMatrixTest |
0 | jalview.math.SparseMatrixTest@5a772895 | |
| testTraverse Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testTraverseToPosition Test class: jalview.util.MapListTest |
0 | jalview.util.MapListTest@27f0ad19 | |
| testTred_matchesMatrix Test class: jalview.math.SparseMatrixTest |
0 | jalview.math.SparseMatrixTest@5a772895 | |
| testTred_reproducible Test class: jalview.math.MatrixTest |
0 | jalview.math.MatrixTest@59221b97 | |
| testTred_reproducible Test class: jalview.math.SparseMatrixTest |
0 | jalview.math.SparseMatrixTest@5a772895 | |
| testTreeIO Test class: jalview.io.NewickFileTests |
0 | jalview.io.NewickFileTests@49bd54f7 | |
| testTreeIO Test class: jalview.io.NewickFileTests |
0 | jalview.io.NewickFileTests@6b5f8707 | |
| testTreeIO Test class: jalview.io.NewickFileTests |
0 | jalview.io.NewickFileTests@772485dd | |
| testTrimLeft_noColumns Test class: jalview.commands.TrimRegionCommandTest |
0 | jalview.commands.TrimRegionCommandTest@4ced35ed | |
| testTrimLeft_oneColumn Test class: jalview.commands.TrimRegionCommandTest |
0 | jalview.commands.TrimRegionCommandTest@4ced35ed | |
| testTrimLeft_withUndoAndRedo Test class: jalview.commands.TrimRegionCommandTest |
0 | jalview.commands.TrimRegionCommandTest@4ced35ed | |
| testTrimMapping Test class: jalview.io.gff.GffHelperBaseTest |
0 | jalview.io.gff.GffHelperBaseTest@1a1d3c1a | |
| testTrimRight_noColumns Test class: jalview.commands.TrimRegionCommandTest |
0 | jalview.commands.TrimRegionCommandTest@4ced35ed | |
| testTrimRight_oneColumn Test class: jalview.commands.TrimRegionCommandTest |
0 | jalview.commands.TrimRegionCommandTest@4ced35ed | |
| testTrimRight_withUndoAndRedo Test class: jalview.commands.TrimRegionCommandTest |
0 | jalview.commands.TrimRegionCommandTest@4ced35ed | |
| testTypeMatches Test class: jalview.datamodel.PDBEntryTest |
0 | jalview.datamodel.PDBEntryTest@7561db12 | |
| testUnderflow Test class: jalview.util.SparseCountTest |
0 | jalview.util.SparseCountTest@1af1347d | |
| testUndo_cut Test class: jalview.commands.EditCommandTest |
0 | jalview.commands.EditCommandTest@12f3afb5 | |
| testUndo_deleteGap Test class: jalview.commands.EditCommandTest |
0 | jalview.commands.EditCommandTest@12f3afb5 | |
| testUndo_insertGap Test class: jalview.commands.EditCommandTest |
0 | jalview.commands.EditCommandTest@12f3afb5 | |
| testUndo_multipleCommands Test class: jalview.commands.EditCommandTest |
0 | jalview.commands.EditCommandTest@12f3afb5 | |
| testUndo_multipleInsertGaps Test class: jalview.commands.EditCommandTest |
0 | jalview.commands.EditCommandTest@12f3afb5 | |
| testUpdateConservation_qualityOnly Test class: jalview.gui.AlignViewportTest |
0 | jalview.gui.AlignViewportTest@437e951d | |
| testUpdateFrom Test class: jalview.datamodel.DBRefEntryTest |
0 | jalview.datamodel.DBRefEntryTest@42deb43a | |
| testUpdateFrom Test class: jalview.datamodel.PDBEntryTest |
0 | jalview.datamodel.PDBEntryTest@7561db12 | |
| testUpdateLayout_endRes Test class: jalview.gui.AlignmentPanelTest |
0 | jalview.gui.AlignmentPanelTest@77b325b3 | |
| testUpdatePDBIds Test class: jalview.datamodel.SequenceTest |
0 | jalview.datamodel.SequenceTest@36dce7ed | |
| testUrl Test class: jalview.urls.UrlLinkDisplayTest |
0 | jalview.urls.UrlLinkDisplayTest@1ad777f | |
| testUrlDecode Test class: jalview.util.StringUtilsTest |
0 | jalview.util.StringUtilsTest@632aa1a3 | |
| testUrlEncode Test class: jalview.util.StringUtilsTest |
0 | jalview.util.StringUtilsTest@632aa1a3 | |
| testUrlLinkCreationNoRegex Test class: jalview.util.UrlLinkTest |
0 | jalview.util.UrlLinkTest@20765ed5 | |
| testUrlLinkCreationWithRegex Test class: jalview.util.UrlLinkTest |
0 | jalview.util.UrlLinkTest@20765ed5 | |
| testUrlLinks Test class: jalview.urls.CustomUrlProviderTest |
0 | jalview.urls.CustomUrlProviderTest@3b4ef7 | |
| testUrlLinks Test class: jalview.urls.IdentifiersUrlProviderTest |
0 | jalview.urls.IdentifiersUrlProviderTest@5987e932 | |
| testValues Test class: jalview.urls.UrlLinkTableModelTest |
0 | jalview.urls.UrlLinkTableModelTest@5bbbdd4b | |
| testVarargsToTypes Test class: jalview.datamodel.features.SequenceFeaturesTest |
0 | jalview.datamodel.features.SequenceFeaturesTest@70f43b45 | |
| testVectorMultiply Test class: jalview.math.RotatableMatrixTest |
0 | jalview.math.RotatableMatrixTest@6ac4944a | |
| testVerdict Test class: jalview.analysis.ConservationTest |
0 | jalview.analysis.ConservationTest@51c929ae | |
| testVerifyAlignmentDatasetRefs Test class: jalview.datamodel.AlignmentTest |
0 | jalview.datamodel.AlignmentTest@27dc79f7 | |
| testVersionChecker Test class: jalview.bin.CacheTest |
10 | jalview.bin.CacheTest@ea27e34 | |
| testViewportRanges Test class: jalview.viewmodel.ViewportRangesTest |
0 | jalview.viewmodel.ViewportRangesTest@76b0ae1b | |
| testVisibleBlocksVisBoundsIterator Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testVisibleContigsIterator Test class: jalview.datamodel.HiddenColumnsTest |
0 | jalview.datamodel.HiddenColumnsTest@3bb9efbc | |
| testVisibleRegionsAtHiddenEdges Test class: jalview.datamodel.VisibleContigsIteratorTest |
0 | jalview.datamodel.VisibleContigsIteratorTest@33d05366 | |
| testWrapTooltip_longText Test class: jalview.gui.JvSwingUtilsTest |
0 | jalview.gui.JvSwingUtilsTest@1e287667 | |
| testWrapTooltip_multilineShortText Test class: jalview.gui.JvSwingUtilsTest |
0 | jalview.gui.JvSwingUtilsTest@1e287667 | |
| testWrapTooltip_shortText Test class: jalview.gui.JvSwingUtilsTest |
0 | jalview.gui.JvSwingUtilsTest@1e287667 | |
| testWrongFile Test class: jalview.io.TCoffeeScoreFileTest |
0 | jalview.io.TCoffeeScoreFileTest@60b85ba1 | |
| test_countNucleotide Test class: jalview.datamodel.ResidueCountTest |
0 | jalview.datamodel.ResidueCountTest@24b52d3e | |
| test_countPeptide Test class: jalview.datamodel.ResidueCountTest |
0 | jalview.datamodel.ResidueCountTest@24b52d3e | |
| test_seqIdNameEquals Test class: jalview.analysis.SequenceIdMatcherTest |
0 | jalview.analysis.SequenceIdMatcherTest@7577b641 | |
| test_unexpectedNucleotide Test class: jalview.datamodel.ResidueCountTest |
0 | jalview.datamodel.ResidueCountTest@24b52d3e | |
| test_unexpectedPeptide Test class: jalview.datamodel.ResidueCountTest |
0 | jalview.datamodel.ResidueCountTest@24b52d3e | |
| testcomputeSimilarity_matchLongestSequence Test class: jalview.analysis.scoremodels.ScoreMatrixTest |
0 | jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7 | |
| testcomputeSimilarity_matchShortestSequence Test class: jalview.analysis.scoremodels.ScoreMatrixTest |
0 | jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7 | |
| testgetPDBIdwithSpecifiedChain Test class: jalview.fts.service.pdb.PDBFTSPanelTest |
0 | jalview.fts.service.pdb.PDBFTSPanelTest@4102b1b1 | |
| updateCacheTest Test class: jalview.io.cache.JvCacheableInputBoxTest |
0 | jalview.io.cache.JvCacheableInputBoxTest@2fb68ec6 | |
| viewRefPdbAnnotation Test class: jalview.project.Jalview2xmlTests |
1 | jalview.project.Jalview2xmlTests@39fc6b2c | |